CRISPRone

CRISPRone report for GCA_900147505.1_428

♦ Seq 1: FRTY01000159.1 Pseudomonas aeruginosa isolate 428 genome assembly, contig: 428.NODE_170_length_1026_cov_32.854774, whole genome shotgun sequence

⇒Summary: seq-len = 1080 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 50-978 bp Zoom in on locus 1 x16 CRISPR array Location: 50-978 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 50-978 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 50-978 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FRTY01000083.1 Pseudomonas aeruginosa isolate 428 genome assembly, contig: 428.NODE_88_length_34553_cov_30.178768, whole genome shotgun sequence

⇒Summary: seq-len = 34607 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 102-8982 bp Zoom in on locus 1 x3 x3 CRISPR array Location: 102-250 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 102-250 bp Num of repeats: 3 Spacers: s1-s2 Gene: cd09718:cas1 Type: universal Location: 511-1485 bp Gene: COG1203:cas3 Type: Type-I Location: 1482-4712 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 4770-6074 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 6061-7044 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 7055-8083 bp Gene: cd09739:cas6f Type: other Location: 8087-8650 bp CRISPR array Location: 8835-8982 bp Num of repeats: 3 Spacers: s3-s4 CRISPR array Location: 8835-8982 bp Num of repeats: 3 Spacers: s3-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 102-250 bp]: array | spacers
           [Locus range 8835-8982 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FRTY01000316.1 Pseudomonas aeruginosa isolate 428 genome assembly, contig: 428.NODE_406_length_33950_cov_32.094906, whole genome shotgun sequence

⇒Summary: seq-len = 34004 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 16693-18160 bp Zoom in on locus 1 x25 CRISPR array Location: 16693-18160 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 16693-18160 bp Num of repeats: 25 Spacers: s1-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 16693-18160 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)