CRISPRone

CRISPRone report for GCA_900147525.1_429

♦ Seq 1: FRTR01000155.1 Pseudomonas aeruginosa isolate 429 genome assembly, contig: 429.NODE_164_length_38190_cov_45.858288, whole genome shotgun sequence

⇒Summary: seq-len = 38242 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18954-29950 bp Zoom in on locus 1 x18 x12 CRISPR array Location: 18954-20019 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 18954-20019 bp Num of repeats: 18 Spacers: s1-s17 Gene: pfam09707:cas2 Type: universal Location: 20084-20383 bp Gene: cd09719:cas1 Type: universal Location: 20380-21270 bp Gene: pfam08798:cas6e Type: other Location: 21297-21836 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 21883-22545 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 22547-23689 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 23699-24229 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 24226-25794 bp Gene: cd09641:cas3HD Type: Type-I Location: 25797-28478 bp CRISPR array Location: 29251-29950 bp Num of repeats: 12 Spacers: s18-s28 CRISPR array Location: 29251-29950 bp Num of repeats: 12 Spacers: s18-s28 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 18954-20019 bp]: array | spacers
           [Locus range 29251-29950 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FRTR01000078.1 Pseudomonas aeruginosa isolate 429 genome assembly, contig: 429.NODE_80_length_29957_cov_41.935806, whole genome shotgun sequence

⇒Summary: seq-len = 30009 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-8476 bp Zoom in on locus 1 x19 Gene: pfam09615:cas7f Type: Subtype-I-F Location: 1-564 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 575-1558 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 1545-2849 bp Gene: COG1203:cas3 Type: Type-I Location: 2907-6137 bp Gene: cd09718:cas1 Type: universal Location: 6134-7108 bp CRISPR array Location: 7370-8476 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 7370-8476 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 7370-8476 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FRTR01000060.1 Pseudomonas aeruginosa isolate 429 genome assembly, contig: 429.NODE_61_length_27690_cov_42.586170, whole genome shotgun sequence

⇒Summary: seq-len = 27742 bp; # of CRISPR array = 1; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 25619-27741 bp Zoom in on locus 1 x15 CRISPR array Location: 25619-26482 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 25619-26482 bp Num of repeats: 15 Spacers: s1-s14 Gene: cd09739:cas6f Type: other Location: 26665-27228 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 27232-27741 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 25619-26482 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)