CRISPRone

CRISPRone report for GCA_900147545.1_424

♦ Seq 1: FRTZ01000098.1 Pseudomonas aeruginosa isolate 424 genome assembly, contig: 424.NODE_108_length_34775_cov_46.398994, whole genome shotgun sequence

⇒Summary: seq-len = 34815 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 88-8968 bp Zoom in on locus 1 x3 x3 CRISPR array Location: 88-236 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 88-236 bp Num of repeats: 3 Spacers: s1-s2 Gene: cd09718:cas1 Type: universal Location: 497-1471 bp Gene: COG1203:cas3 Type: Type-I Location: 1468-4698 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 4756-6060 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 6047-7030 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 7041-8069 bp Gene: cd09739:cas6f Type: other Location: 8073-8636 bp CRISPR array Location: 8821-8968 bp Num of repeats: 3 Spacers: s3-s4 CRISPR array Location: 8821-8968 bp Num of repeats: 3 Spacers: s3-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 88-236 bp]: array | spacers
           [Locus range 8821-8968 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FRTZ01000119.1 Pseudomonas aeruginosa isolate 424 genome assembly, contig: 424.NODE_130_length_34019_cov_47.653252, whole genome shotgun sequence

⇒Summary: seq-len = 34059 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 16664-18191 bp Zoom in on locus 1 x26 CRISPR array Location: 16664-18191 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 16664-18191 bp Num of repeats: 26 Spacers: s1-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 16664-18191 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FRTZ01000220.1 Pseudomonas aeruginosa isolate 424 genome assembly, contig: 424.NODE_266_length_1012_cov_54.349804, whole genome shotgun sequence

⇒Summary: seq-len = 1052 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 36-964 bp Zoom in on locus 1 x16 CRISPR array Location: 36-964 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 36-964 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 36-964 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)