CRISPRone

CRISPRone report for GCA_900147555.1_427

♦ Seq 1: FRTT01000081.1 Pseudomonas aeruginosa isolate 427 genome assembly, contig: 427.NODE_88_length_8648_cov_33.529022, whole genome shotgun sequence

⇒Summary: seq-len = 8692 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3798-3945 bp Zoom in on locus 1 x3 CRISPR array Location: 3798-3945 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 3798-3945 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3798-3945 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FRTT01000030.1 Pseudomonas aeruginosa isolate 427 genome assembly, contig: 427.NODE_32_length_47755_cov_34.952820, whole genome shotgun sequence

⇒Summary: seq-len = 47799 bp; # of CRISPR array = 3; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8410-20023 bp Zoom in on locus 1 x16 x10 x13 CRISPR array Location: 8410-9356 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 8410-9356 bp Num of repeats: 16 Spacers: s1-s15 Gene: COG1203:cas3 Type: Type-I Location: 10129-12810 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 12813-14381 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 14378-14908 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 14918-16060 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 16063-16725 bp Gene: pfam08798:cas6e Type: other Location: 16772-17311 bp Gene: cd09719:cas1 Type: universal Location: 17338-18228 bp Gene: pfam09707:cas2 Type: universal Location: 18225-18524 bp CRISPR array Location: 18589-19167 bp Num of repeats: 10 Spacers: s16-s24 CRISPR array Location: 18589-19167 bp Num of repeats: 10 Spacers: s16-s24 CRISPR array Location: 19262-20023 bp Num of repeats: 13 Spacers: s25-s36 CRISPR array Location: 19262-20023 bp Num of repeats: 13 Spacers: s25-s36 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 8410-9356 bp]: array | spacers
           [Locus range 18589-19167 bp]: array | spacers
           [Locus range 19262-20023 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)