CRISPRone

CRISPRone report for GCA_900147565.1_430

♦ Seq 1: FRTU01000180.1 Pseudomonas aeruginosa isolate 430 genome assembly, contig: 430.NODE_258_length_34060_cov_43.916969, whole genome shotgun sequence

⇒Summary: seq-len = 34104 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 16663-18130 bp Zoom in on locus 1 x25 CRISPR array Location: 16663-18130 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 16663-18130 bp Num of repeats: 25 Spacers: s1-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 16663-18130 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FRTU01000172.1 Pseudomonas aeruginosa isolate 430 genome assembly, contig: 430.NODE_221_length_1016_cov_45.296261, whole genome shotgun sequence

⇒Summary: seq-len = 1060 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 40-968 bp Zoom in on locus 1 x16 CRISPR array Location: 40-968 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 40-968 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 40-968 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FRTU01000111.1 Pseudomonas aeruginosa isolate 430 genome assembly, contig: 430.NODE_123_length_43656_cov_41.838806, whole genome shotgun sequence

⇒Summary: seq-len = 43700 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 34729-43609 bp Zoom in on locus 1 x3 x3 CRISPR array Location: 34729-34877 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 34729-34877 bp Num of repeats: 3 Spacers: s1-s2 Gene: cd09739:cas6f Type: other Location: 35061-35624 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 35628-36656 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 36667-37650 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 37637-38941 bp Gene: COG1203:cas3 Type: Type-I Location: 38999-42229 bp Gene: cd09718:cas1 Type: universal Location: 42226-43200 bp CRISPR array Location: 43462-43609 bp Num of repeats: 3 Spacers: s3-s4 CRISPR array Location: 43462-43609 bp Num of repeats: 3 Spacers: s3-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 34729-34877 bp]: array | spacers
           [Locus range 43462-43609 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)