CRISPRone

CRISPRone report for GCA_900147615.1_435

♦ Seq 1: FRUD01000157.1 Pseudomonas aeruginosa isolate 435 genome assembly, contig: 435.NODE_168_length_38066_cov_41.213943, whole genome shotgun sequence

⇒Summary: seq-len = 38116 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18835-29831 bp Zoom in on locus 1 x18 x12 CRISPR array Location: 18835-19900 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 18835-19900 bp Num of repeats: 18 Spacers: s1-s17 Gene: pfam09707:cas2 Type: universal Location: 19965-20264 bp Gene: cd09719:cas1 Type: universal Location: 20261-21151 bp Gene: pfam08798:cas6e Type: other Location: 21178-21717 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 21764-22426 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 22428-23570 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 23580-24110 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 24107-25675 bp Gene: cd09641:cas3HD Type: Type-I Location: 25678-28359 bp CRISPR array Location: 29132-29831 bp Num of repeats: 12 Spacers: s18-s28 CRISPR array Location: 29132-29831 bp Num of repeats: 12 Spacers: s18-s28 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 18835-19900 bp]: array | spacers
           [Locus range 29132-29831 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FRUD01000251.1 Pseudomonas aeruginosa isolate 435 genome assembly, contig: 435.NODE_335_length_58273_cov_39.273369, whole genome shotgun sequence

⇒Summary: seq-len = 58323 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 21928-32481 bp Zoom in on locus 1 x19 x15 CRISPR array Location: 21928-23035 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 21928-23035 bp Num of repeats: 19 Spacers: s1-s18 Gene: cd09718:cas1 Type: universal Location: 23296-24270 bp Gene: COG1203:cas3 Type: Type-I Location: 24267-27497 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 27555-28859 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 28846-29829 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 29840-30868 bp Gene: cd09739:cas6f Type: other Location: 30872-31435 bp CRISPR array Location: 31619-32481 bp Num of repeats: 15 Spacers: s19-s32 CRISPR array Location: 31619-32481 bp Num of repeats: 15 Spacers: s19-s32 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 21928-23035 bp]: array | spacers
           [Locus range 31619-32481 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)