CRISPRone

CRISPRone report for GCA_900147625.1_436

♦ Seq 1: FRUE01000025.1 Pseudomonas aeruginosa isolate 436 genome assembly, contig: 436.NODE_25_length_38601_cov_42.386803, whole genome shotgun sequence

⇒Summary: seq-len = 38651 bp; # of CRISPR array = 3; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18713-30325 bp Zoom in on locus 1 x13 x10 x16 CRISPR array Location: 18713-19473 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 18713-19473 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 19569-20146 bp Num of repeats: 10 Spacers: s13-s21 CRISPR array Location: 19569-20146 bp Num of repeats: 10 Spacers: s13-s21 Gene: pfam09707:cas2 Type: universal Location: 20211-20510 bp Gene: cd09719:cas1 Type: universal Location: 20507-21397 bp Gene: pfam08798:cas6e Type: other Location: 21424-21963 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 22010-22672 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 22675-23817 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 23827-24357 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 24354-25922 bp Gene: COG1203:cas3 Type: Type-I Location: 25925-28606 bp CRISPR array Location: 29380-30325 bp Num of repeats: 16 Spacers: s22-s36 CRISPR array Location: 29380-30325 bp Num of repeats: 16 Spacers: s22-s36 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 18713-19473 bp]: array | spacers
           [Locus range 19569-20146 bp]: array | spacers
           [Locus range 29380-30325 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FRUE01000031.1 Pseudomonas aeruginosa isolate 436 genome assembly, contig: 436.NODE_34_length_8638_cov_36.799606, whole genome shotgun sequence

⇒Summary: seq-len = 8688 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4748-4896 bp Zoom in on locus 1 x3 CRISPR array Location: 4748-4896 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 4748-4896 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4748-4896 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)