CRISPRone

CRISPRone report for GCA_900147645.1_438

♦ Seq 1: FRUG01000178.1 Pseudomonas aeruginosa isolate 438 genome assembly, contig: 438.NODE_197_length_57884_cov_37.669544, whole genome shotgun sequence

⇒Summary: seq-len = 57930 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 25850-36403 bp Zoom in on locus 1 x15 x19 CRISPR array Location: 25850-26713 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 25850-26713 bp Num of repeats: 15 Spacers: s1-s14 Gene: cd09739:cas6f Type: other Location: 26896-27459 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 27463-28491 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 28502-29485 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 29472-30776 bp Gene: COG1203:cas3 Type: Type-I Location: 30834-34064 bp Gene: cd09718:cas1 Type: universal Location: 34061-35035 bp CRISPR array Location: 35297-36403 bp Num of repeats: 19 Spacers: s15-s32 CRISPR array Location: 35297-36403 bp Num of repeats: 19 Spacers: s15-s32 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 25850-26713 bp]: array | spacers
           [Locus range 35297-36403 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FRUG01000022.1 Pseudomonas aeruginosa isolate 438 genome assembly, contig: 438.NODE_23_length_31373_cov_45.386990, whole genome shotgun sequence

⇒Summary: seq-len = 31419 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8277-19274 bp Zoom in on locus 1 x12 x18 CRISPR array Location: 8277-8977 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 8277-8977 bp Num of repeats: 12 Spacers: s1-s11 Gene: cd09641:cas3HD Type: Type-I Location: 9749-12430 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 12433-14001 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 13998-14528 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 14538-15680 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 15682-16344 bp Gene: pfam08798:cas6e Type: other Location: 16391-16930 bp Gene: cd09719:cas1 Type: universal Location: 16957-17847 bp Gene: pfam09707:cas2 Type: universal Location: 17844-18143 bp CRISPR array Location: 18208-19274 bp Num of repeats: 18 Spacers: s12-s28 CRISPR array Location: 18208-19274 bp Num of repeats: 18 Spacers: s12-s28 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 8277-8977 bp]: array | spacers
           [Locus range 18208-19274 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)