CRISPRone

CRISPRone report for GCA_900147725.1_13_1

♦ Seq 1: FRUO01000029.1 Pseudomonas aeruginosa isolate 13.1 genome assembly, contig: 13_1.NODE_30_length_40519_cov_45.649769, whole genome shotgun sequence

⇒Summary: seq-len = 40581 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 15872-21319 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 15872-16741 bp Gene: unk Type: unknown Location: 17082-17294 bp Gene: unk Type: unknown Location: 17400-19538 bp Gene: cls000038:cas7 Type: Subtype-I-B Location: 19538-21319 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FRUO01000217.1 Pseudomonas aeruginosa isolate 13.1 genome assembly, contig: 13_1.NODE_376_length_70355_cov_41.389980, whole genome shotgun sequence

⇒Summary: seq-len = 70417 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 16661-17229 bp Zoom in on locus 1 x10 CRISPR array Location: 16661-17229 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 16661-17229 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 16661-17229 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FRUO01000014.1 Pseudomonas aeruginosa isolate 13.1 genome assembly, contig: 13_1.NODE_14_length_84643_cov_39.780289, whole genome shotgun sequence

⇒Summary: seq-len = 84705 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 25827-35885 bp Zoom in on locus 1 x10 x10 CRISPR array Location: 25827-26394 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 25827-26394 bp Num of repeats: 10 Spacers: s1-s9 Gene: cd09739:cas6f Type: other Location: 26577-27140 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 27144-28172 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 28183-29166 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 29153-30454 bp Gene: COG1203:cas3 Type: Type-I Location: 30865-34095 bp Gene: cd09718:cas1 Type: universal Location: 34092-35066 bp CRISPR array Location: 35318-35885 bp Num of repeats: 10 Spacers: s10-s18 CRISPR array Location: 35318-35885 bp Num of repeats: 10 Spacers: s10-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 25827-26394 bp]: array | spacers
           [Locus range 35318-35885 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)