CRISPRone

CRISPRone report for GCA_900147735.1_136_1

♦ Seq 1: FRUQ01001432.1 Pseudomonas aeruginosa isolate 136.1 genome assembly, contig: 136_1.NODE_1988_length_8576_cov_118.762825, whole genome shotgun sequence

⇒Summary: seq-len = 8620 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 13-8619 bp Zoom in on locus 1 x10 x10 CRISPR array Location: 13-590 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 13-590 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 686-1263 bp Num of repeats: 10 Spacers: s10-s18 CRISPR array Location: 686-1263 bp Num of repeats: 10 Spacers: s10-s18 Gene: pfam09707:cas2 Type: universal Location: 1328-1627 bp Gene: cd09719:cas1 Type: universal Location: 1624-2514 bp Gene: pfam08798:cas6e Type: other Location: 2541-3080 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 3127-3789 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 3792-4934 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 4944-5474 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 5471-7039 bp Gene: COG1203:cas3 Type: Type-I Location: 7042-8619 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 13-590 bp]: array | spacers
           [Locus range 686-1263 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FRUQ01001291.1 Pseudomonas aeruginosa isolate 136.1 genome assembly, contig: 136_1.NODE_1759_length_3721_cov_89.208549, whole genome shotgun sequence

⇒Summary: seq-len = 3765 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1729-2674 bp Zoom in on locus 1 x16 CRISPR array Location: 1729-2674 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 1729-2674 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1729-2674 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FRUQ01001777.1 Pseudomonas aeruginosa isolate 136.1 genome assembly, contig: 136_1.NODE_2685_length_1864_cov_106.158798, whole genome shotgun sequence

⇒Summary: seq-len = 1908 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 16-167 bp Zoom in on locus 1 x3 CRISPR array Location: 16-167 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 16-167 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 16-167 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FRUQ01001898.1 Pseudomonas aeruginosa isolate 136.1 genome assembly, contig: 136_1.NODE_3189_length_837_cov_57.923538, whole genome shotgun sequence

⇒Summary: seq-len = 881 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 292-440 bp Zoom in on locus 1 x3 CRISPR array Location: 292-440 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 292-440 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 292-440 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)