CRISPRone

CRISPRone report for GCA_900147745.1_138_1

♦ Seq 1: FRUP01000159.1 Pseudomonas aeruginosa isolate 138.1 genome assembly, contig: 138_1.NODE_194_length_32063_cov_48.688705, whole genome shotgun sequence

⇒Summary: seq-len = 32113 bp; # of CRISPR array = 3; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8325-19938 bp Zoom in on locus 1 x16 x10 x13 CRISPR array Location: 8325-9271 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 8325-9271 bp Num of repeats: 16 Spacers: s1-s15 Gene: COG1203:cas3 Type: Type-I Location: 10044-12725 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 12728-14296 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 14293-14823 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 14833-15975 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 15978-16640 bp Gene: pfam08798:cas6e Type: other Location: 16687-17226 bp Gene: cd09719:cas1 Type: universal Location: 17253-18143 bp Gene: pfam09707:cas2 Type: universal Location: 18140-18439 bp CRISPR array Location: 18504-19082 bp Num of repeats: 10 Spacers: s16-s24 CRISPR array Location: 18504-19082 bp Num of repeats: 10 Spacers: s16-s24 CRISPR array Location: 19177-19938 bp Num of repeats: 13 Spacers: s25-s36 CRISPR array Location: 19177-19938 bp Num of repeats: 13 Spacers: s25-s36 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 8325-9271 bp]: array | spacers
           [Locus range 18504-19082 bp]: array | spacers
           [Locus range 19177-19938 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FRUP01000174.1 Pseudomonas aeruginosa isolate 138.1 genome assembly, contig: 138_1.NODE_211_length_8496_cov_37.968102, whole genome shotgun sequence

⇒Summary: seq-len = 8546 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4618-4766 bp Zoom in on locus 1 x3 CRISPR array Location: 4618-4766 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 4618-4766 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4618-4766 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)