CRISPRone

CRISPRone report for GCA_900147765.1_140_1

♦ Seq 1: FRVD01001718.1 Pseudomonas aeruginosa isolate 140.1 genome assembly, contig: 140_1.NODE_2651_length_848_cov_43.100235, whole genome shotgun sequence

⇒Summary: seq-len = 898 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 298-446 bp Zoom in on locus 1 x3 CRISPR array Location: 298-446 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 298-446 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 298-446 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FRVD01001656.1 Pseudomonas aeruginosa isolate 140.1 genome assembly, contig: 140_1.NODE_2473_length_2939_cov_85.464783, whole genome shotgun sequence

⇒Summary: seq-len = 2989 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 967-1912 bp Zoom in on locus 1 x16 CRISPR array Location: 967-1912 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 967-1912 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 967-1912 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FRVD01000781.1 Pseudomonas aeruginosa isolate 140.1 genome assembly, contig: 140_1.NODE_1018_length_10533_cov_100.640366, whole genome shotgun sequence

⇒Summary: seq-len = 10583 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3-8814 bp Zoom in on locus 1 x10 x13 Gene: COG1203:cas3 Type: Type-I Location: 3-1601 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 1604-3172 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 3169-3699 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 3709-4851 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 4854-5516 bp Gene: pfam08798:cas6e Type: other Location: 5563-6102 bp Gene: cd09719:cas1 Type: universal Location: 6129-7019 bp Gene: pfam09707:cas2 Type: universal Location: 7016-7315 bp CRISPR array Location: 7380-7958 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 7380-7958 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 8053-8814 bp Num of repeats: 13 Spacers: s10-s21 CRISPR array Location: 8053-8814 bp Num of repeats: 13 Spacers: s10-s21 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 7380-7958 bp]: array | spacers
           [Locus range 8053-8814 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)