CRISPRone

CRISPRone report for GCA_900147885.1_29_1

♦ Seq 1: FRVC01000105.1 Pseudomonas aeruginosa isolate 29.1 genome assembly, contig: 29_1.NODE_191_length_49516_cov_46.871010, whole genome shotgun sequence

⇒Summary: seq-len = 49560 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37317-48884 bp Zoom in on locus 1 x15 x30 CRISPR array Location: 37317-38181 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 37317-38181 bp Num of repeats: 15 Spacers: s1-s14 Gene: cd09739:cas6f Type: other Location: 38365-38928 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 38932-39960 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 39971-40954 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 40941-42242 bp Gene: COG1203:cas3 Type: Type-I Location: 42653-45883 bp Gene: cd09718:cas1 Type: universal Location: 45880-46854 bp CRISPR array Location: 47115-48884 bp Num of repeats: 30 Spacers: s15-s43 CRISPR array Location: 47115-48884 bp Num of repeats: 30 Spacers: s15-s43 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 37317-38181 bp]: array | spacers
           [Locus range 47115-48884 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FRVC01000114.1 Pseudomonas aeruginosa isolate 29.1 genome assembly, contig: 29_1.NODE_241_length_112462_cov_51.222244, whole genome shotgun sequence

⇒Summary: seq-len = 112506 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 262-1370 bp Zoom in on locus 1 x19 CRISPR array Location: 262-1370 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 262-1370 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 262-1370 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FRVC01000056.1 Pseudomonas aeruginosa isolate 29.1 genome assembly, contig: 29_1.NODE_59_length_97949_cov_50.590275, whole genome shotgun sequence

⇒Summary: seq-len = 97993 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 10172-17569 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 10172-11074 bp Gene: unk Type: unknown Location: 11081-11869 bp Gene: COG4804:PD-DExK Type: other Location: 11915-13051 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 17114-17569 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)