CRISPRone

CRISPRone report for GCA_900147955.1_423_1

♦ Seq 1: FRVM01000149.1 Pseudomonas aeruginosa isolate 423.1 genome assembly, contig: 423_1.NODE_164_length_43667_cov_40.401241, whole genome shotgun sequence

⇒Summary: seq-len = 43709 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 90-8970 bp Zoom in on locus 1 x3 x3 CRISPR array Location: 90-238 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 90-238 bp Num of repeats: 3 Spacers: s1-s2 Gene: cd09718:cas1 Type: universal Location: 499-1473 bp Gene: COG1203:cas3 Type: Type-I Location: 1470-4700 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 4758-6062 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 6049-7032 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 7043-8071 bp Gene: cd09739:cas6f Type: other Location: 8075-8638 bp CRISPR array Location: 8823-8970 bp Num of repeats: 3 Spacers: s3-s4 CRISPR array Location: 8823-8970 bp Num of repeats: 3 Spacers: s3-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 90-238 bp]: array | spacers
           [Locus range 8823-8970 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FRVM01000035.1 Pseudomonas aeruginosa isolate 423.1 genome assembly, contig: 423_1.NODE_37_length_213260_cov_45.846268, whole genome shotgun sequence

⇒Summary: seq-len = 213302 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 212901-213289 bp Zoom in on locus 1 x7 CRISPR array Location: 212901-213289 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 212901-213289 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 212901-213289 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FRVM01000169.1 Pseudomonas aeruginosa isolate 423.1 genome assembly, contig: 423_1.NODE_214_length_1014_cov_49.725838, whole genome shotgun sequence

⇒Summary: seq-len = 1056 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38-966 bp Zoom in on locus 1 x16 CRISPR array Location: 38-966 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 38-966 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 38-966 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FRVM01000007.1 Pseudomonas aeruginosa isolate 423.1 genome assembly, contig: 423_1.NODE_7_length_16856_cov_45.052090, whole genome shotgun sequence

⇒Summary: seq-len = 16898 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 12-939 bp Zoom in on locus 1 x16 CRISPR array Location: 12-939 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 12-939 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 12-939 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)