CRISPRone

CRISPRone report for GCA_900147975.1_427_1

♦ Seq 1: FRVJ01000052.1 Pseudomonas aeruginosa isolate 427.1 genome assembly, contig: 427_1.NODE_54_length_47167_cov_41.255539, whole genome shotgun sequence

⇒Summary: seq-len = 47217 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 27780-38776 bp Zoom in on locus 1 x18 x12 CRISPR array Location: 27780-28845 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 27780-28845 bp Num of repeats: 18 Spacers: s1-s17 Gene: pfam09707:cas2 Type: universal Location: 28910-29209 bp Gene: cd09719:cas1 Type: universal Location: 29206-30096 bp Gene: pfam08798:cas6e Type: other Location: 30123-30662 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 30709-31371 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 31373-32515 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 32525-33055 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 33052-34620 bp Gene: cd09641:cas3HD Type: Type-I Location: 34623-37304 bp CRISPR array Location: 38077-38776 bp Num of repeats: 12 Spacers: s18-s28 CRISPR array Location: 38077-38776 bp Num of repeats: 12 Spacers: s18-s28 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 27780-28845 bp]: array | spacers
           [Locus range 38077-38776 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FRVJ01000044.1 Pseudomonas aeruginosa isolate 427.1 genome assembly, contig: 427_1.NODE_46_length_70226_cov_38.134464, whole genome shotgun sequence

⇒Summary: seq-len = 70276 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38192-48745 bp Zoom in on locus 1 x15 x19 CRISPR array Location: 38192-39055 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 38192-39055 bp Num of repeats: 15 Spacers: s1-s14 Gene: cd09739:cas6f Type: other Location: 39238-39801 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39805-40833 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40844-41827 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41814-43118 bp Gene: COG1203:cas3 Type: Type-I Location: 43176-46406 bp Gene: cd09718:cas1 Type: universal Location: 46403-47377 bp CRISPR array Location: 47639-48745 bp Num of repeats: 19 Spacers: s15-s32 CRISPR array Location: 47639-48745 bp Num of repeats: 19 Spacers: s15-s32 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38192-39055 bp]: array | spacers
           [Locus range 47639-48745 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)