CRISPRone

CRISPRone report for GCA_900147985.1_437_1

♦ Seq 1: FRVO01000108.1 Pseudomonas aeruginosa isolate 437.1 genome assembly, contig: 437_1.NODE_122_length_47115_cov_44.768608, whole genome shotgun sequence

⇒Summary: seq-len = 47161 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 94-8974 bp Zoom in on locus 1 x3 x3 CRISPR array Location: 94-242 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 94-242 bp Num of repeats: 3 Spacers: s1-s2 Gene: cd09718:cas1 Type: universal Location: 503-1477 bp Gene: COG1203:cas3 Type: Type-I Location: 1474-4704 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 4762-6066 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 6053-7036 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 7047-8075 bp Gene: cd09739:cas6f Type: other Location: 8079-8642 bp CRISPR array Location: 8827-8974 bp Num of repeats: 3 Spacers: s3-s4 CRISPR array Location: 8827-8974 bp Num of repeats: 3 Spacers: s3-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 94-242 bp]: array | spacers
           [Locus range 8827-8974 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FRVO01000136.1 Pseudomonas aeruginosa isolate 437.1 genome assembly, contig: 437_1.NODE_208_length_1018_cov_51.762280, whole genome shotgun sequence

⇒Summary: seq-len = 1064 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 96-1023 bp Zoom in on locus 1 x16 CRISPR array Location: 96-1023 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 96-1023 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 96-1023 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FRVO01000024.1 Pseudomonas aeruginosa isolate 437.1 genome assembly, contig: 437_1.NODE_27_length_397049_cov_50.832561, whole genome shotgun sequence

⇒Summary: seq-len = 397095 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 16865-18391 bp Zoom in on locus 1 x26 CRISPR array Location: 16865-18391 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 16865-18391 bp Num of repeats: 26 Spacers: s1-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 16865-18391 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)