CRISPRone

CRISPRone report for GCA_900147995.1_439_1

♦ Seq 1: FRVS01000241.1 Pseudomonas aeruginosa isolate 439.1 genome assembly, contig: 439_1.NODE_278_length_32043_cov_52.710201, whole genome shotgun sequence

⇒Summary: seq-len = 32093 bp; # of CRISPR array = 3; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 12199-23811 bp Zoom in on locus 1 x13 x10 x16 CRISPR array Location: 12199-12959 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 12199-12959 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 13055-13632 bp Num of repeats: 10 Spacers: s13-s21 CRISPR array Location: 13055-13632 bp Num of repeats: 10 Spacers: s13-s21 Gene: pfam09707:cas2 Type: universal Location: 13697-13996 bp Gene: cd09719:cas1 Type: universal Location: 13993-14883 bp Gene: pfam08798:cas6e Type: other Location: 14910-15449 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 15496-16158 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 16161-17303 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 17313-17843 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 17840-19408 bp Gene: COG1203:cas3 Type: Type-I Location: 19411-22092 bp CRISPR array Location: 22866-23811 bp Num of repeats: 16 Spacers: s22-s36 CRISPR array Location: 22866-23811 bp Num of repeats: 16 Spacers: s22-s36 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 12199-12959 bp]: array | spacers
           [Locus range 13055-13632 bp]: array | spacers
           [Locus range 22866-23811 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FRVS01000012.1 Pseudomonas aeruginosa isolate 439.1 genome assembly, contig: 439_1.NODE_14_length_8489_cov_44.685474, whole genome shotgun sequence

⇒Summary: seq-len = 8539 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4618-4766 bp Zoom in on locus 1 x3 CRISPR array Location: 4618-4766 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 4618-4766 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4618-4766 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)