CRISPRone

CRISPRone report for GCA_900148035.1_81_1

♦ Seq 1: FRVQ01000144.1 Pseudomonas aeruginosa isolate 81.1 genome assembly, contig: 81_1.NODE_263_length_47266_cov_84.879402, whole genome shotgun sequence

⇒Summary: seq-len = 47316 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 761-10129 bp Zoom in on locus 1 x4 x9 CRISPR array Location: 761-969 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 761-969 bp Num of repeats: 4 Spacers: s1-s3 Gene: cd09718:cas1 Type: universal Location: 1233-2207 bp Gene: COG1203:cas3 Type: Type-I Location: 2204-5434 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 5492-6796 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 6783-7766 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 7777-8805 bp Gene: cd09739:cas6f Type: other Location: 8809-9372 bp CRISPR array Location: 9622-10129 bp Num of repeats: 9 Spacers: s4-s11 CRISPR array Location: 9622-10129 bp Num of repeats: 9 Spacers: s4-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 761-969 bp]: array | spacers
           [Locus range 9622-10129 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FRVQ01000087.1 Pseudomonas aeruginosa isolate 81.1 genome assembly, contig: 81_1.NODE_98_length_18851_cov_90.530266, whole genome shotgun sequence

⇒Summary: seq-len = 18901 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 16738-18625 bp Zoom in on locus 1 x32 CRISPR array Location: 16738-18625 bp Num of repeats: 32 Spacers: s1-s31 CRISPR array Location: 16738-18625 bp Num of repeats: 32 Spacers: s1-s31 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 16738-18625 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)