CRISPRone

CRISPRone report for GCA_900148045.1_82_1

♦ Seq 1: FRVR01000014.1 Pseudomonas aeruginosa isolate 82.1 genome assembly, contig: 82_1.NODE_17_length_188225_cov_47.666653, whole genome shotgun sequence

⇒Summary: seq-len = 188285 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 154323-163691 bp Zoom in on locus 1 x4 x9 CRISPR array Location: 154323-154531 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 154323-154531 bp Num of repeats: 4 Spacers: s1-s3 Gene: cd09718:cas1 Type: universal Location: 154795-155769 bp Gene: COG1203:cas3 Type: Type-I Location: 155766-158996 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 159054-160358 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 160345-161328 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 161339-162367 bp Gene: cd09739:cas6f Type: other Location: 162371-162934 bp CRISPR array Location: 163184-163691 bp Num of repeats: 9 Spacers: s4-s11 CRISPR array Location: 163184-163691 bp Num of repeats: 9 Spacers: s4-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 154323-154531 bp]: array | spacers
           [Locus range 163184-163691 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FRVR01000041.1 Pseudomonas aeruginosa isolate 82.1 genome assembly, contig: 82_1.NODE_52_length_278285_cov_48.701164, whole genome shotgun sequence

⇒Summary: seq-len = 278345 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 287-2175 bp Zoom in on locus 1 x32 CRISPR array Location: 287-2175 bp Num of repeats: 32 Spacers: s1-s31 CRISPR array Location: 287-2175 bp Num of repeats: 32 Spacers: s1-s31 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 287-2175 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)