CRISPRone

CRISPRone report for GCA_900148175.1_LRJ01_2

♦ Seq 1: FRWH01000151.1 Pseudomonas aeruginosa isolate LRJ01.2 genome assembly, contig: LRJ01_2.NODE_194_length_20641_cov_61.028973, whole genome shotgun sequence

⇒Summary: seq-len = 20691 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 10296-11404 bp Zoom in on locus 1 x19 CRISPR array Location: 10296-11404 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 10296-11404 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 10296-11404 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FRWH01000692.1 Pseudomonas aeruginosa isolate LRJ01.2 genome assembly, contig: LRJ01_2.NODE_1189_length_24028_cov_56.394081, whole genome shotgun sequence

⇒Summary: seq-len = 24078 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 11829-23396 bp Zoom in on locus 1 x15 x30 CRISPR array Location: 11829-12693 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 11829-12693 bp Num of repeats: 15 Spacers: s1-s14 Gene: cd09739:cas6f Type: other Location: 12877-13440 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 13444-14472 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 14483-15466 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 15453-16754 bp Gene: COG1203:cas3 Type: Type-I Location: 17165-20395 bp Gene: cd09718:cas1 Type: universal Location: 20392-21366 bp CRISPR array Location: 21627-23396 bp Num of repeats: 30 Spacers: s15-s43 CRISPR array Location: 21627-23396 bp Num of repeats: 30 Spacers: s15-s43 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 11829-12693 bp]: array | spacers
           [Locus range 21627-23396 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FRWH01000233.1 Pseudomonas aeruginosa isolate LRJ01.2 genome assembly, contig: LRJ01_2.NODE_292_length_28857_cov_59.888519, whole genome shotgun sequence

⇒Summary: seq-len = 28907 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17489-24886 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 17489-18391 bp Gene: unk Type: unknown Location: 18398-19186 bp Gene: COG4804:PD-DExK Type: other Location: 19232-20368 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 24431-24886 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)