CRISPRone

CRISPRone report for GCA_900148185.1_LRJ02

♦ Seq 1: FRWI01001009.1 Pseudomonas aeruginosa isolate LRJ02 genome assembly, contig: LRJ02.NODE_1434_length_16361_cov_68.706070, whole genome shotgun sequence

⇒Summary: seq-len = 16413 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 685-12252 bp Zoom in on locus 1 x30 x15 CRISPR array Location: 685-2455 bp Num of repeats: 30 Spacers: s1-s29 CRISPR array Location: 685-2455 bp Num of repeats: 30 Spacers: s1-s29 Gene: cd09718:cas1 Type: universal Location: 2715-3689 bp Gene: COG1203:cas3 Type: Type-I Location: 3686-6916 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 7327-8628 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 8615-9598 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 9609-10637 bp Gene: cd09739:cas6f Type: other Location: 10641-11204 bp CRISPR array Location: 11389-12252 bp Num of repeats: 15 Spacers: s30-s43 CRISPR array Location: 11389-12252 bp Num of repeats: 15 Spacers: s30-s43 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 685-2455 bp]: array | spacers
           [Locus range 11389-12252 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FRWI01000147.1 Pseudomonas aeruginosa isolate LRJ02 genome assembly, contig: LRJ02.NODE_155_length_25653_cov_64.329514, whole genome shotgun sequence

⇒Summary: seq-len = 25705 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 876-8273 bp Zoom in on locus 1 Gene: COG0640:csa3 Type: Subtype-I-A Location: 876-1331 bp Gene: COG4804:PD-DExK Type: other Location: 5394-6530 bp Gene: unk Type: unknown Location: 6576-7364 bp Gene: pfam13280:WYL Type: other Location: 7371-8273 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FRWI01000969.1 Pseudomonas aeruginosa isolate LRJ02 genome assembly, contig: LRJ02.NODE_1250_length_19052_cov_62.992283, whole genome shotgun sequence

⇒Summary: seq-len = 19104 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7697-8804 bp Zoom in on locus 1 x19 CRISPR array Location: 7697-8804 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 7697-8804 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 7697-8804 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)