CRISPRone

CRISPRone report for GCA_900148195.1_LRJ03

♦ Seq 1: FRWK01000518.1 Pseudomonas aeruginosa isolate LRJ03 genome assembly, contig: LRJ03.NODE_594_length_32090_cov_88.832504, whole genome shotgun sequence

⇒Summary: seq-len = 32140 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 15860-21307 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 15860-16729 bp Gene: unk Type: unknown Location: 17070-17282 bp Gene: unk Type: unknown Location: 17388-19526 bp Gene: cls000038:cas7 Type: Subtype-I-B Location: 19526-21307 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FRWK01000970.1 Pseudomonas aeruginosa isolate LRJ03 genome assembly, contig: LRJ03.NODE_1273_length_8734_cov_60.812801, whole genome shotgun sequence

⇒Summary: seq-len = 8784 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 268-837 bp Zoom in on locus 1 x10 CRISPR array Location: 268-837 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 268-837 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 268-837 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FRWK01000174.1 Pseudomonas aeruginosa isolate LRJ03 genome assembly, contig: LRJ03.NODE_193_length_17772_cov_65.461006, whole genome shotgun sequence

⇒Summary: seq-len = 17822 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7499-17557 bp Zoom in on locus 1 x10 x10 CRISPR array Location: 7499-8066 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 7499-8066 bp Num of repeats: 10 Spacers: s1-s9 Gene: cd09739:cas6f Type: other Location: 8249-8812 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 8816-9844 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 9855-10838 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 10825-12126 bp Gene: COG1203:cas3 Type: Type-I Location: 12537-15767 bp Gene: cd09718:cas1 Type: universal Location: 15764-16738 bp CRISPR array Location: 16990-17557 bp Num of repeats: 10 Spacers: s10-s18 CRISPR array Location: 16990-17557 bp Num of repeats: 10 Spacers: s10-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 7499-8066 bp]: array | spacers
           [Locus range 16990-17557 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)