CRISPRone

CRISPRone report for GCA_900148205.1_LRJ04

♦ Seq 1: FRWJ01000261.1 Pseudomonas aeruginosa isolate LRJ04 genome assembly, contig: LRJ04.NODE_293_length_24192_cov_60.431507, whole genome shotgun sequence

⇒Summary: seq-len = 24242 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6636-16694 bp Zoom in on locus 1 x10 x10 CRISPR array Location: 6636-7204 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 6636-7204 bp Num of repeats: 10 Spacers: s1-s9 Gene: cd09718:cas1 Type: universal Location: 7455-8429 bp Gene: COG1203:cas3 Type: Type-I Location: 8426-11656 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 12067-13368 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 13355-14338 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 14349-15377 bp Gene: cd09739:cas6f Type: other Location: 15381-15944 bp CRISPR array Location: 16128-16694 bp Num of repeats: 10 Spacers: s10-s18 CRISPR array Location: 16128-16694 bp Num of repeats: 10 Spacers: s10-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 6636-7204 bp]: array | spacers
           [Locus range 16128-16694 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FRWJ01000349.1 Pseudomonas aeruginosa isolate LRJ04 genome assembly, contig: LRJ04.NODE_392_length_18789_cov_67.415512, whole genome shotgun sequence

⇒Summary: seq-len = 18839 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 10319-10888 bp Zoom in on locus 1 x10 CRISPR array Location: 10319-10888 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 10319-10888 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 10319-10888 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)