CRISPRone

CRISPRone report for GCA_900148265.1_LRJ14

♦ Seq 1: FRWL01000061.1 Pseudomonas aeruginosa isolate LRJ14 genome assembly, contig: LRJ14.NODE_65_length_41797_cov_46.360359, whole genome shotgun sequence

⇒Summary: seq-len = 41859 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 22761-24649 bp Zoom in on locus 1 x32 CRISPR array Location: 22761-24649 bp Num of repeats: 32 Spacers: s1-s31 CRISPR array Location: 22761-24649 bp Num of repeats: 32 Spacers: s1-s31 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 22761-24649 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FRWL01000140.1 Pseudomonas aeruginosa isolate LRJ14 genome assembly, contig: LRJ14.NODE_210_length_188691_cov_45.218166, whole genome shotgun sequence

⇒Summary: seq-len = 188753 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 24600-34448 bp Zoom in on locus 1 x9 x12 CRISPR array Location: 24600-25108 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 24600-25108 bp Num of repeats: 9 Spacers: s1-s8 Gene: cd09739:cas6f Type: other Location: 25357-25920 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 25924-26952 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 26963-27946 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 27933-29237 bp Gene: COG1203:cas3 Type: Type-I Location: 29295-32525 bp Gene: cd09718:cas1 Type: universal Location: 32522-33496 bp CRISPR array Location: 33761-34448 bp Num of repeats: 12 Spacers: s9-s19 CRISPR array Location: 33761-34448 bp Num of repeats: 12 Spacers: s9-s19 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 24600-25108 bp]: array | spacers
           [Locus range 33761-34448 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)