CRISPRone

CRISPRone report for GCA_900148285.1_LRJ16

♦ Seq 1: FRWM01000001.1 Pseudomonas aeruginosa isolate LRJ16 genome assembly, contig: LRJ16.NODE_1_length_468972_cov_72.741974, whole genome shotgun sequence

⇒Summary: seq-len = 469010 bp; # of CRISPR array = 3; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 303206-314819 bp Zoom in on locus 1 x16 x10 x13 CRISPR array Location: 303206-304152 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 303206-304152 bp Num of repeats: 16 Spacers: s1-s15 Gene: COG1203:cas3 Type: Type-I Location: 304925-307606 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 307609-309177 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 309174-309704 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 309714-310856 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 310859-311521 bp Gene: pfam08798:cas6e Type: other Location: 311568-312107 bp Gene: cd09719:cas1 Type: universal Location: 312134-313024 bp Gene: pfam09707:cas2 Type: universal Location: 313021-313320 bp CRISPR array Location: 313385-313963 bp Num of repeats: 10 Spacers: s16-s24 CRISPR array Location: 313385-313963 bp Num of repeats: 10 Spacers: s16-s24 CRISPR array Location: 314058-314819 bp Num of repeats: 13 Spacers: s25-s36 CRISPR array Location: 314058-314819 bp Num of repeats: 13 Spacers: s25-s36 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 303206-304152 bp]: array | spacers
           [Locus range 313385-313963 bp]: array | spacers
           [Locus range 314058-314819 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FRWM01000032.1 Pseudomonas aeruginosa isolate LRJ16 genome assembly, contig: LRJ16.NODE_42_length_184083_cov_69.711876, whole genome shotgun sequence

⇒Summary: seq-len = 184121 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 36742-36889 bp Zoom in on locus 1 x3 CRISPR array Location: 36742-36889 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 36742-36889 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 36742-36889 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)