CRISPRone

CRISPRone report for GCA_900148295.1_LRJ17

♦ Seq 1: FRWR01000032.1 Pseudomonas aeruginosa isolate LRJ17 genome assembly, contig: LRJ17.NODE_37_length_165698_cov_50.238361, whole genome shotgun sequence

⇒Summary: seq-len = 165754 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 36739-36886 bp Zoom in on locus 1 x3 CRISPR array Location: 36739-36886 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 36739-36886 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 36739-36886 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FRWR01000030.1 Pseudomonas aeruginosa isolate LRJ17 genome assembly, contig: LRJ17.NODE_35_length_357882_cov_51.907734, whole genome shotgun sequence

⇒Summary: seq-len = 357938 bp; # of CRISPR array = 3; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 299440-311053 bp Zoom in on locus 1 x16 x9 x14 CRISPR array Location: 299440-300386 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 299440-300386 bp Num of repeats: 16 Spacers: s1-s15 Gene: COG1203:cas3 Type: Type-I Location: 301159-303840 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 303843-305411 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 305408-305938 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 305948-307090 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 307093-307755 bp Gene: pfam08798:cas6e Type: other Location: 307802-308341 bp Gene: cd09719:cas1 Type: universal Location: 308368-309258 bp Gene: pfam09707:cas2 Type: universal Location: 309255-309554 bp CRISPR array Location: 309619-310136 bp Num of repeats: 9 Spacers: s16-s23 CRISPR array Location: 309619-310136 bp Num of repeats: 9 Spacers: s16-s23 CRISPR array Location: 310231-311053 bp Num of repeats: 14 Spacers: s24-s36 CRISPR array Location: 310231-311053 bp Num of repeats: 14 Spacers: s24-s36 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 299440-300386 bp]: array | spacers
           [Locus range 309619-310136 bp]: array | spacers
           [Locus range 310231-311053 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)