CRISPRone

CRISPRone report for GCA_900164015.1_16780_8_22

♦ Seq 1: FULX01000002.1 Clostridioides difficile strain VRECD0132 genome assembly, contig: ERS717009SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 553974 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 88013-88629 bp 2 Locus 2: 251901-260222 bp 3 Locus 3: 333505-333862 bp Zoom in on locus 1 x10 Zoom in on locus 2 Zoom in on locus 3 x6 CRISPR array Location: 88013-88629 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 88013-88629 bp Num of repeats: 10 Spacers: s1-s9 Gene: cd09641:cas3HD Type: Type-I Location: 251901-254309 bp Gene: cd09693:cas5 Type: Type-I Location: 254336-255133 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 255149-256165 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 256185-257660 bp Gene: pfam01881:cas6 Type: other Location: 257665-258402 bp Gene: unk Type: unknown Location: 258503-258679 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 259113-260222 bp CRISPR array Location: 333505-333862 bp Num of repeats: 6 Spacers: s10-s14 CRISPR array Location: 333505-333862 bp Num of repeats: 6 Spacers: s10-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 88013-88629 bp]: array | spacers
           [Locus range 333505-333862 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FULX01000012.1 Clostridioides difficile strain VRECD0132 genome assembly, contig: ERS717009SCcontig000012, whole genome shotgun sequence

⇒Summary: seq-len = 69555 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4685-5835 bp Zoom in on locus 1 x18 CRISPR array Location: 4685-5835 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 4685-5835 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4685-5835 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FULX01000003.1 Clostridioides difficile strain VRECD0132 genome assembly, contig: ERS717009SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 530948 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 44786-44880 bp 2 Locus 2: 267083-278128 bp Zoom in on locus 1 x2 Zoom in on locus 2 x24 CRISPR array Location: 44786-44880 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 44786-44880 bp Num of repeats: 2 Spacers: s1-s1 Gene: pfam13280:WYL Type: other Location: 267083-267970 bp Gene: pfam01881:cas6 Type: other Location: 268048-268785 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 268791-270641 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 270643-271557 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 271559-272260 bp Gene: COG1203:cas3 Type: Type-I Location: 272271-274592 bp Gene: pfam01930:cas4 Type: Type-I Location: 274607-275158 bp Gene: cd09722:cas1 Type: universal Location: 275161-276141 bp Gene: cd09725:cas2 Type: universal Location: 276144-276410 bp CRISPR array Location: 276594-278128 bp Num of repeats: 24 Spacers: s2-s24 CRISPR array Location: 276594-278128 bp Num of repeats: 24 Spacers: s2-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 44786-44880 bp]: array | spacers
           [Locus range 276594-278128 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FULX01000001.1 Clostridioides difficile strain VRECD0132 genome assembly, contig: ERS717009SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 723286 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 437976-438535 bp 2 Locus 2: 548826-549583 bp Zoom in on locus 1 x9 Zoom in on locus 2 x12 CRISPR array Location: 437976-438535 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 437976-438535 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 548826-549583 bp Num of repeats: 12 Spacers: s9-s19 CRISPR array Location: 548826-549583 bp Num of repeats: 12 Spacers: s9-s19 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 437976-438535 bp]: array | spacers
           [Locus range 548826-549583 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FULX01000004.1 Clostridioides difficile strain VRECD0132 genome assembly, contig: ERS717009SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 405020 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 307094-307255 bp Zoom in on locus 1 x3 CRISPR array Location: 307094-307255 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 307094-307255 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 307094-307255 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)