CRISPRone

CRISPRone report for GCA_900164025.1_16780_8_13

♦ Seq 1: FULN01000001.1 Clostridioides difficile strain VRECD0043 genome assembly, contig: ERS717000SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1828768 bp; # of CRISPR array = 6; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 381999-382356 bp 2 Locus 2: 492643-493069 bp 3 Locus 3: 669857-670873 bp 4 Locus 4: 997155-997380 bp 5 Locus 5: 1345480-1346166 bp 6 Locus 6: 1508138-1516456 bp 7 Locus 7: 1589877-1589971 bp Zoom in on locus 1 x6 Zoom in on locus 2 x7 Zoom in on locus 3 x16 Zoom in on locus 4 x4 Zoom in on locus 5 x11 Zoom in on locus 6 Zoom in on locus 7 x2 CRISPR array Location: 381999-382356 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 381999-382356 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 492643-493069 bp Num of repeats: 7 Spacers: s6-s11 CRISPR array Location: 492643-493069 bp Num of repeats: 7 Spacers: s6-s11 CRISPR array Location: 669857-670873 bp Num of repeats: 16 Spacers: s12-s26 CRISPR array Location: 669857-670873 bp Num of repeats: 16 Spacers: s12-s26 CRISPR array Location: 997155-997380 bp Num of repeats: 4 Spacers: s27-s29 CRISPR array Location: 997155-997380 bp Num of repeats: 4 Spacers: s27-s29 CRISPR array Location: 1345480-1346166 bp Num of repeats: 11 Spacers: s30-s39 CRISPR array Location: 1345480-1346166 bp Num of repeats: 11 Spacers: s30-s39 Gene: cd09641:cas3HD Type: Type-I Location: 1508138-1510546 bp Gene: cd09693:cas5 Type: Type-I Location: 1510573-1511370 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 1511386-1512399 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 1512419-1513894 bp Gene: pfam01881:cas6 Type: other Location: 1513899-1514636 bp Gene: unk Type: unknown Location: 1514737-1514913 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 1515347-1516456 bp CRISPR array Location: 1589877-1589971 bp Num of repeats: 2 Spacers: s40-s40 CRISPR array Location: 1589877-1589971 bp Num of repeats: 2 Spacers: s40-s40 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 381999-382356 bp]: array | spacers
           [Locus range 492643-493069 bp]: array | spacers
           [Locus range 669857-670873 bp]: array | spacers
           [Locus range 997155-997380 bp]: array | spacers
           [Locus range 1345480-1346166 bp]: array | spacers
           [Locus range 1589877-1589971 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FULN01000010.1 Clostridioides difficile strain VRECD0043 genome assembly, contig: ERS717000SCcontig000010, whole genome shotgun sequence

⇒Summary: seq-len = 71970 bp; # of CRISPR array = 0; # of cas gene = 3  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 56622-68963 bp Zoom in on locus 1 Gene: pfam00078:RT Type: other Location: 56622-58487 bp Gene: COG3513:cas9 Type: Type-II Location: 67053-67481 bp Gene: pfam00078:RT Type: other Location: 67527-68963 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FULN01000004.1 Clostridioides difficile strain VRECD0043 genome assembly, contig: ERS717000SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 392012 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 107205-107298 bp Zoom in on locus 1 x2 CRISPR array Location: 107205-107298 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 107205-107298 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 107205-107298 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FULN01000003.1 Clostridioides difficile strain VRECD0043 genome assembly, contig: ERS717000SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 477642 bp; # of CRISPR array = 3; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 163938-174360 bp 2 Locus 2: 229877-232393 bp Zoom in on locus 1 x14 Zoom in on locus 2 x8 x6 Gene: pfam13280:WYL Type: other Location: 163938-164825 bp Gene: pfam01881:cas6 Type: other Location: 164903-165640 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 165646-167523 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 167525-168439 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 168441-169142 bp Gene: COG1203:cas3 Type: Type-I Location: 169153-171474 bp Gene: pfam01930:cas4 Type: Type-I Location: 171489-172040 bp Gene: cd09722:cas1 Type: universal Location: 172043-173023 bp Gene: cd09725:cas2 Type: universal Location: 173026-173292 bp CRISPR array Location: 173476-174360 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 173476-174360 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 229877-230368 bp Num of repeats: 8 Spacers: s14-s20 CRISPR array Location: 229877-230368 bp Num of repeats: 8 Spacers: s14-s20 CRISPR array Location: 232034-232393 bp Num of repeats: 6 Spacers: s21-s25 CRISPR array Location: 232034-232393 bp Num of repeats: 6 Spacers: s21-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 173476-174360 bp]: array | spacers
           [Locus range 229877-230368 bp]: array | spacers
           [Locus range 232034-232393 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)