CRISPRone

CRISPRone report for GCA_900164045.1_16780_8_27

♦ Seq 1: FULU01000001.1 Clostridioides difficile strain VRECD0137 genome assembly, contig: ERS717014SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1260184 bp; # of CRISPR array = 4; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 244492-245050 bp 2 Locus 2: 318332-326678 bp 3 Locus 3: 488659-489479 bp 4 Locus 4: 849478-849639 bp 5 Locus 5: 1213531-1214613 bp Zoom in on locus 1 x9 Zoom in on locus 2 Zoom in on locus 3 x13 Zoom in on locus 4 x3 Zoom in on locus 5 x17 CRISPR array Location: 244492-245050 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 244492-245050 bp Num of repeats: 9 Spacers: s1-s8 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 318332-319441 bp Gene: unk Type: unknown Location: 319900-320076 bp Gene: pfam01881:cas6 Type: other Location: 320177-320914 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 320919-322394 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 322414-323430 bp Gene: cd09693:cas5 Type: Type-I Location: 323446-324243 bp Gene: cd09641:cas3HD Type: Type-I Location: 324270-326678 bp CRISPR array Location: 488659-489479 bp Num of repeats: 13 Spacers: s9-s20 CRISPR array Location: 488659-489479 bp Num of repeats: 13 Spacers: s9-s20 CRISPR array Location: 849478-849639 bp Num of repeats: 3 Spacers: s21-s22 CRISPR array Location: 849478-849639 bp Num of repeats: 3 Spacers: s21-s22 CRISPR array Location: 1213531-1214613 bp Num of repeats: 17 Spacers: s23-s38 CRISPR array Location: 1213531-1214613 bp Num of repeats: 17 Spacers: s23-s38 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 244492-245050 bp]: array | spacers
           [Locus range 488659-489479 bp]: array | spacers
           [Locus range 849478-849639 bp]: array | spacers
           [Locus range 1213531-1214613 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FULU01000002.1 Clostridioides difficile strain VRECD0137 genome assembly, contig: ERS717014SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 693571 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 165415-165839 bp 2 Locus 2: 276165-276923 bp Zoom in on locus 1 x7 Zoom in on locus 2 x12 CRISPR array Location: 165415-165839 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 165415-165839 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 276165-276923 bp Num of repeats: 12 Spacers: s7-s17 CRISPR array Location: 276165-276923 bp Num of repeats: 12 Spacers: s7-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 165415-165839 bp]: array | spacers
           [Locus range 276165-276923 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FULU01000020.1 Clostridioides difficile strain VRECD0137 genome assembly, contig: ERS717014SCcontig000020, whole genome shotgun sequence

⇒Summary: seq-len = 15298 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5178-6062 bp Zoom in on locus 1 x14 CRISPR array Location: 5178-6062 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 5178-6062 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5178-6062 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FULU01000003.1 Clostridioides difficile strain VRECD0137 genome assembly, contig: ERS717014SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 611161 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 323392-323486 bp 2 Locus 2: 538059-548967 bp Zoom in on locus 1 x2 Zoom in on locus 2 x21 CRISPR array Location: 323392-323486 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 323392-323486 bp Num of repeats: 2 Spacers: s1-s1 Gene: pfam13280:WYL Type: other Location: 538059-538973 bp Gene: pfam01881:cas6 Type: other Location: 538994-539788 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 539794-541671 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 541673-542587 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 542589-543290 bp Gene: COG1203:cas3 Type: Type-I Location: 543301-545622 bp Gene: pfam01930:cas4 Type: Type-I Location: 545637-546188 bp Gene: cd09722:cas1 Type: universal Location: 546191-547171 bp Gene: cd09725:cas2 Type: universal Location: 547174-547440 bp CRISPR array Location: 547624-548967 bp Num of repeats: 21 Spacers: s2-s21 CRISPR array Location: 547624-548967 bp Num of repeats: 21 Spacers: s2-s21 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 323392-323486 bp]: array | spacers
           [Locus range 547624-548967 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)