CRISPRone

CRISPRone report for GCA_900164055.1_16780_8_26

♦ Seq 1: FULG01000002.1 Clostridioides difficile strain VRECD0136 genome assembly, contig: ERS717013SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 841201 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 552858-564109 bp Zoom in on locus 1 x27 Gene: pfam13280:WYL Type: other Location: 552858-553745 bp Gene: pfam01881:cas6 Type: other Location: 553823-554560 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 554566-556416 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 556418-557332 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 557334-558035 bp Gene: COG1203:cas3 Type: Type-I Location: 558046-560367 bp Gene: pfam01930:cas4 Type: Type-I Location: 560382-560933 bp Gene: cd09722:cas1 Type: universal Location: 560936-561916 bp Gene: cd09725:cas2 Type: universal Location: 561919-562185 bp CRISPR array Location: 562369-564109 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 562369-564109 bp Num of repeats: 27 Spacers: s1-s26 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 562369-564109 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FULG01000001.1 Clostridioides difficile strain VRECD0136 genome assembly, contig: ERS717013SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1908594 bp; # of CRISPR array = 8; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 241463-242420 bp 2 Locus 2: 315644-323981 bp 3 Locus 3: 489502-490258 bp 4 Locus 4: 845953-846115 bp 5 Locus 5: 1172252-1173139 bp 6 Locus 6: 1310593-1312046 bp 7 Locus 7: 1402700-1403193 bp 8 Locus 8: 1515568-1516781 bp Zoom in on locus 1 x15 Zoom in on locus 2 Zoom in on locus 3 x12 Zoom in on locus 4 x3 Zoom in on locus 5 x14 Zoom in on locus 6 x7 x7 Zoom in on locus 7 x8 Zoom in on locus 8 x19 CRISPR array Location: 241463-242420 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 241463-242420 bp Num of repeats: 15 Spacers: s1-s14 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 315644-316753 bp Gene: unk Type: unknown Location: 317207-317383 bp Gene: pfam01881:cas6 Type: other Location: 317484-318221 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 318226-319692 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 319711-320724 bp Gene: cd09693:cas5 Type: Type-I Location: 320740-321546 bp Gene: cd09641:cas3HD Type: Type-I Location: 321573-323981 bp CRISPR array Location: 489502-490258 bp Num of repeats: 12 Spacers: s15-s25 CRISPR array Location: 489502-490258 bp Num of repeats: 12 Spacers: s15-s25 CRISPR array Location: 845953-846115 bp Num of repeats: 3 Spacers: s26-s27 CRISPR array Location: 845953-846115 bp Num of repeats: 3 Spacers: s26-s27 CRISPR array Location: 1172252-1173139 bp Num of repeats: 14 Spacers: s28-s40 CRISPR array Location: 1172252-1173139 bp Num of repeats: 14 Spacers: s28-s40 CRISPR array Location: 1310593-1311016 bp Num of repeats: 7 Spacers: s41-s46 CRISPR array Location: 1310593-1311016 bp Num of repeats: 7 Spacers: s41-s46 CRISPR array Location: 1311620-1312046 bp Num of repeats: 7 Spacers: s47-s52 CRISPR array Location: 1311620-1312046 bp Num of repeats: 7 Spacers: s47-s52 CRISPR array Location: 1402700-1403193 bp Num of repeats: 8 Spacers: s53-s59 CRISPR array Location: 1402700-1403193 bp Num of repeats: 8 Spacers: s53-s59 CRISPR array Location: 1515568-1516781 bp Num of repeats: 19 Spacers: s60-s77 CRISPR array Location: 1515568-1516781 bp Num of repeats: 19 Spacers: s60-s77 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 241463-242420 bp]: array | spacers
           [Locus range 489502-490258 bp]: array | spacers
           [Locus range 845953-846115 bp]: array | spacers
           [Locus range 1172252-1173139 bp]: array | spacers
           [Locus range 1310593-1311016 bp]: array | spacers
           [Locus range 1311620-1312046 bp]: array | spacers
           [Locus range 1402700-1403193 bp]: array | spacers
           [Locus range 1515568-1516781 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)