CRISPRone

CRISPRone report for GCA_900164075.1_16780_8_14

♦ Seq 1: FULQ01000001.1 Clostridioides difficile strain VRECD0124 genome assembly, contig: ERS717001SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1161455 bp; # of CRISPR array = 3; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 240409-240966 bp 2 Locus 2: 315186-323051 bp 3 Locus 3: 488808-489035 bp 4 Locus 4: 859911-860137 bp Zoom in on locus 1 x9 Zoom in on locus 2 Zoom in on locus 3 x4 Zoom in on locus 4 x4 CRISPR array Location: 240409-240966 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 240409-240966 bp Num of repeats: 9 Spacers: s1-s8 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 315186-316295 bp Gene: pfam01881:cas6 Type: other Location: 316553-317290 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 317295-318770 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 318790-319803 bp Gene: cd09693:cas5 Type: Type-I Location: 319819-320616 bp Gene: cd09641:cas3HD Type: Type-I Location: 320643-323051 bp CRISPR array Location: 488808-489035 bp Num of repeats: 4 Spacers: s9-s11 CRISPR array Location: 488808-489035 bp Num of repeats: 4 Spacers: s9-s11 CRISPR array Location: 859911-860137 bp Num of repeats: 4 Spacers: s12-s14 CRISPR array Location: 859911-860137 bp Num of repeats: 4 Spacers: s12-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 240409-240966 bp]: array | spacers
           [Locus range 488808-489035 bp]: array | spacers
           [Locus range 859911-860137 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FULQ01000002.1 Clostridioides difficile strain VRECD0124 genome assembly, contig: ERS717001SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 788842 bp; # of CRISPR array = 6; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 123866-125606 bp 2 Locus 2: 185569-187543 bp 3 Locus 3: 277067-277825 bp 4 Locus 4: 394175-394596 bp 5 Locus 5: 598131-598557 bp Zoom in on locus 1 x27 Zoom in on locus 2 x13 x9 Zoom in on locus 3 x12 Zoom in on locus 4 x7 Zoom in on locus 5 x7 CRISPR array Location: 123866-125606 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 123866-125606 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 185569-186386 bp Num of repeats: 13 Spacers: s27-s38 CRISPR array Location: 185569-186386 bp Num of repeats: 13 Spacers: s27-s38 CRISPR array Location: 186989-187543 bp Num of repeats: 9 Spacers: s39-s46 CRISPR array Location: 186989-187543 bp Num of repeats: 9 Spacers: s39-s46 CRISPR array Location: 277067-277825 bp Num of repeats: 12 Spacers: s47-s57 CRISPR array Location: 277067-277825 bp Num of repeats: 12 Spacers: s47-s57 CRISPR array Location: 394175-394596 bp Num of repeats: 7 Spacers: s58-s63 CRISPR array Location: 394175-394596 bp Num of repeats: 7 Spacers: s58-s63 CRISPR array Location: 598131-598557 bp Num of repeats: 7 Spacers: s64-s69 CRISPR array Location: 598131-598557 bp Num of repeats: 7 Spacers: s64-s69 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 123866-125606 bp]: array | spacers
           [Locus range 185569-186386 bp]: array | spacers
           [Locus range 186989-187543 bp]: array | spacers
           [Locus range 277067-277825 bp]: array | spacers
           [Locus range 394175-394596 bp]: array | spacers
           [Locus range 598131-598557 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FULQ01000004.1 Clostridioides difficile strain VRECD0124 genome assembly, contig: ERS717001SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 519164 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 498779-498872 bp Zoom in on locus 1 x2 CRISPR array Location: 498779-498872 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 498779-498872 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 498779-498872 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)