CRISPRone

CRISPRone report for GCA_900164085.1_16780_8_31

♦ Seq 1: FULY01000006.1 Clostridioides difficile strain VRECD0141 genome assembly, contig: ERS717018SCcontig000006, whole genome shotgun sequence

⇒Summary: seq-len = 327649 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 327103-327264 bp Zoom in on locus 1 x3 CRISPR array Location: 327103-327264 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 327103-327264 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 327103-327264 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FULY01000011.1 Clostridioides difficile strain VRECD0141 genome assembly, contig: ERS717018SCcontig000011, whole genome shotgun sequence

⇒Summary: seq-len = 126245 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 87097-87778 bp Zoom in on locus 1 x11 CRISPR array Location: 87097-87778 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 87097-87778 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 87097-87778 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FULY01000005.1 Clostridioides difficile strain VRECD0141 genome assembly, contig: ERS717018SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 383417 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 189973-191254 bp Zoom in on locus 1 x20 CRISPR array Location: 189973-191254 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 189973-191254 bp Num of repeats: 20 Spacers: s1-s19 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 189973-191254 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FULY01000002.1 Clostridioides difficile strain VRECD0141 genome assembly, contig: ERS717018SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 637189 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 145324-145418 bp 2 Locus 2: 367894-379203 bp Zoom in on locus 1 x2 Zoom in on locus 2 x28 CRISPR array Location: 145324-145418 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 145324-145418 bp Num of repeats: 2 Spacers: s1-s1 Gene: pfam13280:WYL Type: other Location: 367894-368781 bp Gene: pfam01881:cas6 Type: other Location: 368859-369596 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 369602-371452 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 371454-372368 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 372370-373071 bp Gene: COG1203:cas3 Type: Type-I Location: 373082-375403 bp Gene: pfam01930:cas4 Type: Type-I Location: 375418-375969 bp Gene: cd09722:cas1 Type: universal Location: 375972-376952 bp Gene: cd09725:cas2 Type: universal Location: 376955-377221 bp CRISPR array Location: 377405-379203 bp Num of repeats: 28 Spacers: s2-s28 CRISPR array Location: 377405-379203 bp Num of repeats: 28 Spacers: s2-s28 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 145324-145418 bp]: array | spacers
           [Locus range 377405-379203 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FULY01000003.1 Clostridioides difficile strain VRECD0141 genome assembly, contig: ERS717018SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 592960 bp; # of CRISPR array = 6; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 19735-20425 bp 2 Locus 2: 130745-131704 bp 3 Locus 3: 222433-227562 bp 4 Locus 4: 365523-366869 bp Zoom in on locus 1 x11 Zoom in on locus 2 x15 Zoom in on locus 3 x7 x4 x17 Zoom in on locus 4 x21 CRISPR array Location: 19735-20425 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 19735-20425 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 130745-131704 bp Num of repeats: 15 Spacers: s11-s24 CRISPR array Location: 130745-131704 bp Num of repeats: 15 Spacers: s11-s24 CRISPR array Location: 222433-222857 bp Num of repeats: 7 Spacers: s25-s30 CRISPR array Location: 222433-222857 bp Num of repeats: 7 Spacers: s25-s30 CRISPR array Location: 224461-224685 bp Num of repeats: 4 Spacers: s31-s33 CRISPR array Location: 224461-224685 bp Num of repeats: 4 Spacers: s31-s33 CRISPR array Location: 226478-227562 bp Num of repeats: 17 Spacers: s34-s49 CRISPR array Location: 226478-227562 bp Num of repeats: 17 Spacers: s34-s49 CRISPR array Location: 365523-366869 bp Num of repeats: 21 Spacers: s50-s69 CRISPR array Location: 365523-366869 bp Num of repeats: 21 Spacers: s50-s69 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 19735-20425 bp]: array | spacers
           [Locus range 130745-131704 bp]: array | spacers
           [Locus range 222433-222857 bp]: array | spacers
           [Locus range 224461-224685 bp]: array | spacers
           [Locus range 226478-227562 bp]: array | spacers
           [Locus range 365523-366869 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FULY01000004.1 Clostridioides difficile strain VRECD0141 genome assembly, contig: ERS717018SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 450759 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 123709-132027 bp 2 Locus 2: 205310-205800 bp Zoom in on locus 1 Zoom in on locus 2 x8 Gene: cd09641:cas3HD Type: Type-I Location: 123709-126117 bp Gene: cd09693:cas5 Type: Type-I Location: 126144-126941 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 126957-127970 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 127990-129465 bp Gene: pfam01881:cas6 Type: other Location: 129470-130207 bp Gene: unk Type: unknown Location: 130308-130484 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 130918-132027 bp CRISPR array Location: 205310-205800 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 205310-205800 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 205310-205800 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)