CRISPRone

CRISPRone report for GCA_900164095.1_16780_8_53

♦ Seq 1: FUMK01000003.1 Clostridioides difficile strain VRECD0165 genome assembly, contig: ERS717040SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 422442 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 330529-330886 bp Zoom in on locus 1 x6 CRISPR array Location: 330529-330886 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 330529-330886 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 330529-330886 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUMK01000001.1 Clostridioides difficile strain VRECD0165 genome assembly, contig: ERS717040SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1331600 bp; # of CRISPR array = 5; # of cas gene = 8  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 238813-238974 bp 2 Locus 2: 312255-320572 bp 3 Locus 3: 482544-483231 bp 4 Locus 4: 831330-831556 bp 5 Locus 5: 1133341-1134422 bp 6 Locus 6: 1196075-1200487 bp 7 Locus 7: 1218248-1218740 bp Zoom in on locus 1 x3 Zoom in on locus 2 Zoom in on locus 3 x11 Zoom in on locus 4 x4 Zoom in on locus 5 x17 Zoom in on locus 6 Zoom in on locus 7 x8 CRISPR array Location: 238813-238974 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 238813-238974 bp Num of repeats: 3 Spacers: s1-s2 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 312255-313364 bp Gene: pfam01881:cas6 Type: other Location: 314074-314811 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 314816-316291 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 316311-317324 bp Gene: cd09693:cas5 Type: Type-I Location: 317340-318137 bp Gene: cd09641:cas3HD Type: Type-I Location: 318164-320572 bp CRISPR array Location: 482544-483231 bp Num of repeats: 11 Spacers: s3-s12 CRISPR array Location: 482544-483231 bp Num of repeats: 11 Spacers: s3-s12 CRISPR array Location: 831330-831556 bp Num of repeats: 4 Spacers: s13-s15 CRISPR array Location: 831330-831556 bp Num of repeats: 4 Spacers: s13-s15 CRISPR array Location: 1133341-1134422 bp Num of repeats: 17 Spacers: s16-s31 CRISPR array Location: 1133341-1134422 bp Num of repeats: 17 Spacers: s16-s31 Gene: COG0640:csa3 Type: Subtype-I-A Location: 1196075-1196443 bp Gene: unk Type: unknown Location: 1196619-1198163 bp Gene: cas14:cas14 Type: Type-V Location: 1199369-1200487 bp CRISPR array Location: 1218248-1218740 bp Num of repeats: 8 Spacers: s32-s38 CRISPR array Location: 1218248-1218740 bp Num of repeats: 8 Spacers: s32-s38 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 238813-238974 bp]: array | spacers
           [Locus range 482544-483231 bp]: array | spacers
           [Locus range 831330-831556 bp]: array | spacers
           [Locus range 1133341-1134422 bp]: array | spacers
           [Locus range 1218248-1218740 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUMK01000006.1 Clostridioides difficile strain VRECD0165 genome assembly, contig: ERS717040SCcontig000006, whole genome shotgun sequence

⇒Summary: seq-len = 207544 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 33053-43632 bp Zoom in on locus 1 x16 CRISPR array Location: 33053-34067 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 33053-34067 bp Num of repeats: 16 Spacers: s1-s15 Gene: cd09725:cas2 Type: universal Location: 34251-34517 bp Gene: cd09722:cas1 Type: universal Location: 34520-35500 bp Gene: pfam01930:cas4 Type: Type-I Location: 35503-36021 bp Gene: cd09641:cas3HD Type: Type-I Location: 36069-38390 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 38401-39102 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 39104-40018 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 40020-41897 bp Gene: pfam01881:cas6 Type: other Location: 41903-42697 bp Gene: pfam13280:WYL Type: other Location: 42718-43632 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 33053-34067 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUMK01000004.1 Clostridioides difficile strain VRECD0165 genome assembly, contig: ERS717040SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 358769 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 103413-103506 bp Zoom in on locus 1 x2 CRISPR array Location: 103413-103506 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 103413-103506 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 103413-103506 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)