CRISPRone

CRISPRone report for GCA_900164105.1_16780_8_28

♦ Seq 1: FULL01000018.1 Clostridioides difficile strain VRECD0138 genome assembly, contig: ERS717015SCcontig000018, whole genome shotgun sequence

⇒Summary: seq-len = 15248 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4702-5983 bp Zoom in on locus 1 x20 CRISPR array Location: 4702-5983 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 4702-5983 bp Num of repeats: 20 Spacers: s1-s19 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4702-5983 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FULL01000002.1 Clostridioides difficile strain VRECD0138 genome assembly, contig: ERS717015SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 450675 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 123712-132030 bp 2 Locus 2: 205313-205803 bp Zoom in on locus 1 Zoom in on locus 2 x8 Gene: cd09641:cas3HD Type: Type-I Location: 123712-126120 bp Gene: cd09693:cas5 Type: Type-I Location: 126147-126944 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 126960-127973 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 127993-129468 bp Gene: pfam01881:cas6 Type: other Location: 129473-130210 bp Gene: unk Type: unknown Location: 130311-130487 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 130921-132030 bp CRISPR array Location: 205313-205803 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 205313-205803 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 205313-205803 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FULL01000013.1 Clostridioides difficile strain VRECD0138 genome assembly, contig: ERS717015SCcontig000013, whole genome shotgun sequence

⇒Summary: seq-len = 126246 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38468-39150 bp Zoom in on locus 1 x11 CRISPR array Location: 38468-39150 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 38468-39150 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 38468-39150 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FULL01000005.1 Clostridioides difficile strain VRECD0138 genome assembly, contig: ERS717015SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 362902 bp; # of CRISPR array = 5; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 19739-20429 bp 2 Locus 2: 130749-131708 bp 3 Locus 3: 222437-227566 bp Zoom in on locus 1 x11 Zoom in on locus 2 x15 Zoom in on locus 3 x7 x4 x17 CRISPR array Location: 19739-20429 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 19739-20429 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 130749-131708 bp Num of repeats: 15 Spacers: s11-s24 CRISPR array Location: 130749-131708 bp Num of repeats: 15 Spacers: s11-s24 CRISPR array Location: 222437-222861 bp Num of repeats: 7 Spacers: s25-s30 CRISPR array Location: 222437-222861 bp Num of repeats: 7 Spacers: s25-s30 CRISPR array Location: 224465-224689 bp Num of repeats: 4 Spacers: s31-s33 CRISPR array Location: 224465-224689 bp Num of repeats: 4 Spacers: s31-s33 CRISPR array Location: 226482-227566 bp Num of repeats: 17 Spacers: s34-s49 CRISPR array Location: 226482-227566 bp Num of repeats: 17 Spacers: s34-s49 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 19739-20429 bp]: array | spacers
           [Locus range 130749-131708 bp]: array | spacers
           [Locus range 222437-222861 bp]: array | spacers
           [Locus range 224465-224689 bp]: array | spacers
           [Locus range 226482-227566 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FULL01000006.1 Clostridioides difficile strain VRECD0138 genome assembly, contig: ERS717015SCcontig000006, whole genome shotgun sequence

⇒Summary: seq-len = 327641 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 327101-327262 bp Zoom in on locus 1 x3 CRISPR array Location: 327101-327262 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 327101-327262 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 327101-327262 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FULL01000001.1 Clostridioides difficile strain VRECD0138 genome assembly, contig: ERS717015SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 637201 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 145327-145421 bp 2 Locus 2: 367897-379206 bp Zoom in on locus 1 x2 Zoom in on locus 2 x28 CRISPR array Location: 145327-145421 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 145327-145421 bp Num of repeats: 2 Spacers: s1-s1 Gene: pfam13280:WYL Type: other Location: 367897-368784 bp Gene: pfam01881:cas6 Type: other Location: 368862-369599 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 369605-371455 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 371457-372371 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 372373-373074 bp Gene: COG1203:cas3 Type: Type-I Location: 373085-375406 bp Gene: pfam01930:cas4 Type: Type-I Location: 375421-375972 bp Gene: cd09722:cas1 Type: universal Location: 375975-376955 bp Gene: cd09725:cas2 Type: universal Location: 376958-377224 bp CRISPR array Location: 377408-379206 bp Num of repeats: 28 Spacers: s2-s28 CRISPR array Location: 377408-379206 bp Num of repeats: 28 Spacers: s2-s28 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 145327-145421 bp]: array | spacers
           [Locus range 377408-379206 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: FULL01000009.1 Clostridioides difficile strain VRECD0138 genome assembly, contig: ERS717015SCcontig000009, whole genome shotgun sequence

⇒Summary: seq-len = 231628 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4192-5538 bp Zoom in on locus 1 x21 CRISPR array Location: 4192-5538 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 4192-5538 bp Num of repeats: 21 Spacers: s1-s20 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4192-5538 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)