CRISPRone

CRISPRone report for GCA_900164115.1_16780_8_32

♦ Seq 1: FUME01000001.1 Clostridioides difficile strain VRECD0142 genome assembly, contig: ERS717019SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1408732 bp; # of CRISPR array = 8; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 242595-242954 bp 2 Locus 2: 316223-324088 bp 3 Locus 3: 489526-490608 bp 4 Locus 4: 786944-788354 bp 5 Locus 5: 834024-834250 bp 6 Locus 6: 1149093-1150831 bp 7 Locus 7: 1298189-1299575 bp 8 Locus 8: 1389840-1390397 bp Zoom in on locus 1 x6 Zoom in on locus 2 Zoom in on locus 3 x17 Zoom in on locus 4 x22 Zoom in on locus 5 x4 Zoom in on locus 6 x27 Zoom in on locus 7 x10 x3 Zoom in on locus 8 x9 CRISPR array Location: 242595-242954 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 242595-242954 bp Num of repeats: 6 Spacers: s1-s5 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 316223-317332 bp Gene: pfam01881:cas6 Type: other Location: 317590-318327 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 318332-319807 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 319827-320840 bp Gene: cd09693:cas5 Type: Type-I Location: 320856-321653 bp Gene: cd09641:cas3HD Type: Type-I Location: 321680-324088 bp CRISPR array Location: 489526-490608 bp Num of repeats: 17 Spacers: s6-s21 CRISPR array Location: 489526-490608 bp Num of repeats: 17 Spacers: s6-s21 CRISPR array Location: 786944-788354 bp Num of repeats: 22 Spacers: s22-s42 CRISPR array Location: 786944-788354 bp Num of repeats: 22 Spacers: s22-s42 CRISPR array Location: 834024-834250 bp Num of repeats: 4 Spacers: s43-s45 CRISPR array Location: 834024-834250 bp Num of repeats: 4 Spacers: s43-s45 CRISPR array Location: 1149093-1150831 bp Num of repeats: 27 Spacers: s46-s71 CRISPR array Location: 1149093-1150831 bp Num of repeats: 27 Spacers: s46-s71 CRISPR array Location: 1298189-1298812 bp Num of repeats: 10 Spacers: s72-s80 CRISPR array Location: 1298189-1298812 bp Num of repeats: 10 Spacers: s72-s80 CRISPR array Location: 1299415-1299575 bp Num of repeats: 3 Spacers: s81-s82 CRISPR array Location: 1299415-1299575 bp Num of repeats: 3 Spacers: s81-s82 CRISPR array Location: 1389840-1390397 bp Num of repeats: 9 Spacers: s83-s90 CRISPR array Location: 1389840-1390397 bp Num of repeats: 9 Spacers: s83-s90 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 242595-242954 bp]: array | spacers
           [Locus range 489526-490608 bp]: array | spacers
           [Locus range 786944-788354 bp]: array | spacers
           [Locus range 834024-834250 bp]: array | spacers
           [Locus range 1149093-1150831 bp]: array | spacers
           [Locus range 1298189-1298812 bp]: array | spacers
           [Locus range 1299415-1299575 bp]: array | spacers
           [Locus range 1389840-1390397 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUME01000003.1 Clostridioides difficile strain VRECD0142 genome assembly, contig: ERS717019SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 582590 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 195698-196318 bp 2 Locus 2: 401922-402278 bp Zoom in on locus 1 x10 Zoom in on locus 2 x6 CRISPR array Location: 195698-196318 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 195698-196318 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 401922-402278 bp Num of repeats: 6 Spacers: s10-s14 CRISPR array Location: 401922-402278 bp Num of repeats: 6 Spacers: s10-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 195698-196318 bp]: array | spacers
           [Locus range 401922-402278 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUME01000002.1 Clostridioides difficile strain VRECD0142 genome assembly, contig: ERS717019SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 587874 bp; # of CRISPR array = 2; # of cas gene = 14  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 22627-29910 bp 2 Locus 2: 289786-300995 bp Zoom in on locus 1 x17 Zoom in on locus 2 x26 Gene: cd09693:cas5 Type: Type-I Location: 22627-23274 bp Gene: pfam01881:cas6 Type: other Location: 23265-24029 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 24031-25179 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 25200-26270 bp Gene: COG1203:cas3 Type: Type-I Location: 26281-28263 bp CRISPR array Location: 28830-29910 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 28830-29910 bp Num of repeats: 17 Spacers: s1-s16 Gene: pfam13280:WYL Type: other Location: 289786-290700 bp Gene: pfam01881:cas6 Type: other Location: 290721-291515 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 291521-293371 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 293373-294287 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 294289-294990 bp Gene: COG1203:cas3 Type: Type-I Location: 295001-297322 bp Gene: pfam01930:cas4 Type: Type-I Location: 297337-297888 bp Gene: cd09722:cas1 Type: universal Location: 297891-298871 bp Gene: cd09725:cas2 Type: universal Location: 298874-299140 bp CRISPR array Location: 299324-300995 bp Num of repeats: 26 Spacers: s17-s41 CRISPR array Location: 299324-300995 bp Num of repeats: 26 Spacers: s17-s41 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 28830-29910 bp]: array | spacers
           [Locus range 299324-300995 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)