CRISPRone

CRISPRone report for GCA_900164125.1_16780_8_49

♦ Seq 1: FULM01000006.1 Clostridioides difficile strain VRECD0161 genome assembly, contig: ERS717036SCcontig000006, whole genome shotgun sequence

⇒Summary: seq-len = 251799 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 233080-233634 bp Zoom in on locus 1 x9 CRISPR array Location: 233080-233634 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 233080-233634 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 233080-233634 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FULM01000003.1 Clostridioides difficile strain VRECD0161 genome assembly, contig: ERS717036SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 575923 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 125540-126296 bp Zoom in on locus 1 x12 CRISPR array Location: 125540-126296 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 125540-126296 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 125540-126296 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FULM01000008.1 Clostridioides difficile strain VRECD0161 genome assembly, contig: ERS717036SCcontig000008, whole genome shotgun sequence

⇒Summary: seq-len = 177653 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3487-3978 bp Zoom in on locus 1 x8 CRISPR array Location: 3487-3978 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 3487-3978 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3487-3978 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FULM01000005.1 Clostridioides difficile strain VRECD0161 genome assembly, contig: ERS717036SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 277768 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 90119-90479 bp Zoom in on locus 1 x6 CRISPR array Location: 90119-90479 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 90119-90479 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 90119-90479 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FULM01000001.1 Clostridioides difficile strain VRECD0161 genome assembly, contig: ERS717036SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 871551 bp; # of CRISPR array = 3; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 309287-309381 bp 2 Locus 2: 523220-534287 bp 3 Locus 3: 594786-595213 bp Zoom in on locus 1 x2 Zoom in on locus 2 x24 Zoom in on locus 3 x7 CRISPR array Location: 309287-309381 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 309287-309381 bp Num of repeats: 2 Spacers: s1-s1 Gene: pfam13280:WYL Type: other Location: 523220-524134 bp Gene: pfam01881:cas6 Type: other Location: 524155-524949 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 524955-526805 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 526807-527721 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 527723-528424 bp Gene: cd09641:cas3HD Type: Type-I Location: 528435-530756 bp Gene: pfam01930:cas4 Type: Type-I Location: 530771-531322 bp Gene: cd09722:cas1 Type: universal Location: 531325-532305 bp Gene: cd09725:cas2 Type: universal Location: 532308-532574 bp CRISPR array Location: 532758-534287 bp Num of repeats: 24 Spacers: s2-s24 CRISPR array Location: 532758-534287 bp Num of repeats: 24 Spacers: s2-s24 CRISPR array Location: 594786-595213 bp Num of repeats: 7 Spacers: s25-s30 CRISPR array Location: 594786-595213 bp Num of repeats: 7 Spacers: s25-s30 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 309287-309381 bp]: array | spacers
           [Locus range 532758-534287 bp]: array | spacers
           [Locus range 594786-595213 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FULM01000002.1 Clostridioides difficile strain VRECD0161 genome assembly, contig: ERS717036SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 842067 bp; # of CRISPR array = 3; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 235690-235784 bp 2 Locus 2: 309064-317385 bp 3 Locus 3: 480658-481144 bp 4 Locus 4: 829666-830091 bp Zoom in on locus 1 x2 Zoom in on locus 2 Zoom in on locus 3 x8 Zoom in on locus 4 x7 CRISPR array Location: 235690-235784 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 235690-235784 bp Num of repeats: 2 Spacers: s1-s1 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 309064-310173 bp Gene: unk Type: unknown Location: 310607-310783 bp Gene: pfam01881:cas6 Type: other Location: 310884-311621 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 311626-313101 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 313121-314137 bp Gene: cd09693:cas5 Type: Type-I Location: 314153-314950 bp Gene: cd09641:cas3HD Type: Type-I Location: 314977-317385 bp CRISPR array Location: 480658-481144 bp Num of repeats: 8 Spacers: s2-s8 CRISPR array Location: 480658-481144 bp Num of repeats: 8 Spacers: s2-s8 CRISPR array Location: 829666-830091 bp Num of repeats: 7 Spacers: s9-s14 CRISPR array Location: 829666-830091 bp Num of repeats: 7 Spacers: s9-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 235690-235784 bp]: array | spacers
           [Locus range 480658-481144 bp]: array | spacers
           [Locus range 829666-830091 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)