CRISPRone

CRISPRone report for GCA_900164135.1_16780_8_47

♦ Seq 1: FULR01000001.1 Clostridioides difficile strain VRECD0159 genome assembly, contig: ERS717034SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 788972 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 302909-303656 bp 2 Locus 2: 467076-475537 bp 3 Locus 3: 548820-549315 bp Zoom in on locus 1 x12 Zoom in on locus 2 Zoom in on locus 3 x8 CRISPR array Location: 302909-303656 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 302909-303656 bp Num of repeats: 12 Spacers: s1-s11 Gene: cd09641:cas3HD Type: Type-I Location: 467076-469484 bp Gene: cd09693:cas5 Type: Type-I Location: 469511-470308 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 470324-471340 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 471360-472835 bp Gene: pfam01881:cas6 Type: other Location: 472840-473577 bp Gene: unk Type: unknown Location: 473678-473854 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 474428-475537 bp CRISPR array Location: 548820-549315 bp Num of repeats: 8 Spacers: s12-s18 CRISPR array Location: 548820-549315 bp Num of repeats: 8 Spacers: s12-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 302909-303656 bp]: array | spacers
           [Locus range 548820-549315 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FULR01000006.1 Clostridioides difficile strain VRECD0159 genome assembly, contig: ERS717034SCcontig000006, whole genome shotgun sequence

⇒Summary: seq-len = 301763 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 63616-64950 bp 2 Locus 2: 200768-201057 bp 3 Locus 3: 281669-283477 bp Zoom in on locus 1 x21 Zoom in on locus 2 x5 Zoom in on locus 3 x28 CRISPR array Location: 63616-64950 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 63616-64950 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 200768-201057 bp Num of repeats: 5 Spacers: s21-s24 CRISPR array Location: 200768-201057 bp Num of repeats: 5 Spacers: s21-s24 CRISPR array Location: 281669-283477 bp Num of repeats: 28 Spacers: s25-s51 CRISPR array Location: 281669-283477 bp Num of repeats: 28 Spacers: s25-s51 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 63616-64950 bp]: array | spacers
           [Locus range 200768-201057 bp]: array | spacers
           [Locus range 281669-283477 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FULR01000005.1 Clostridioides difficile strain VRECD0159 genome assembly, contig: ERS717034SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 383802 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 318758-328680 bp Zoom in on locus 1 x6 CRISPR array Location: 318758-319115 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 318758-319115 bp Num of repeats: 6 Spacers: s1-s5 Gene: cd09725:cas2 Type: universal Location: 319299-319565 bp Gene: cd09722:cas1 Type: universal Location: 319568-320548 bp Gene: pfam01930:cas4 Type: Type-I Location: 320551-321069 bp Gene: cd09641:cas3HD Type: Type-I Location: 321117-323438 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 323449-324150 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 324152-325066 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 325068-326945 bp Gene: pfam01881:cas6 Type: other Location: 326951-327745 bp Gene: pfam13280:WYL Type: other Location: 327766-328680 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 318758-319115 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FULR01000013.1 Clostridioides difficile strain VRECD0159 genome assembly, contig: ERS717034SCcontig000013, whole genome shotgun sequence

⇒Summary: seq-len = 99964 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 13030-15514 bp Zoom in on locus 1 x11 x2 CRISPR array Location: 13030-13715 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 13030-13715 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 15420-15514 bp Num of repeats: 2 Spacers: s11-s11 CRISPR array Location: 15420-15514 bp Num of repeats: 2 Spacers: s11-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 13030-13715 bp]: array | spacers
           [Locus range 15420-15514 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FULR01000003.1 Clostridioides difficile strain VRECD0159 genome assembly, contig: ERS717034SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 422703 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 330062-330886 bp Zoom in on locus 1 x13 CRISPR array Location: 330062-330886 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 330062-330886 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 330062-330886 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FULR01000002.1 Clostridioides difficile strain VRECD0159 genome assembly, contig: ERS717034SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 749237 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 679082-679372 bp Zoom in on locus 1 x5 CRISPR array Location: 679082-679372 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 679082-679372 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 679082-679372 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)