CRISPRone

CRISPRone report for GCA_900164145.1_16780_8_19

♦ Seq 1: FULH01000021.1 Clostridioides difficile strain VRECD0129 genome assembly, contig: ERS717006SCcontig000021, whole genome shotgun sequence

⇒Summary: seq-len = 18992 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8627-10602 bp Zoom in on locus 1 x9 x13 CRISPR array Location: 8627-9182 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 8627-9182 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 9784-10602 bp Num of repeats: 13 Spacers: s9-s20 CRISPR array Location: 9784-10602 bp Num of repeats: 13 Spacers: s9-s20 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 8627-9182 bp]: array | spacers
           [Locus range 9784-10602 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FULH01000001.1 Clostridioides difficile strain VRECD0129 genome assembly, contig: ERS717006SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 889852 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 271347-273087 bp 2 Locus 2: 646115-646340 bp Zoom in on locus 1 x27 Zoom in on locus 2 x4 CRISPR array Location: 271347-273087 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 271347-273087 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 646115-646340 bp Num of repeats: 4 Spacers: s27-s29 CRISPR array Location: 646115-646340 bp Num of repeats: 4 Spacers: s27-s29 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 271347-273087 bp]: array | spacers
           [Locus range 646115-646340 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FULH01000003.1 Clostridioides difficile strain VRECD0129 genome assembly, contig: ERS717006SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 550987 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 97856-98082 bp 2 Locus 2: 263839-271704 bp 3 Locus 3: 345925-346481 bp Zoom in on locus 1 x4 Zoom in on locus 2 Zoom in on locus 3 x9 CRISPR array Location: 97856-98082 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 97856-98082 bp Num of repeats: 4 Spacers: s1-s3 Gene: cd09641:cas3HD Type: Type-I Location: 263839-266247 bp Gene: cd09693:cas5 Type: Type-I Location: 266274-267071 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 267087-268100 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 268120-269595 bp Gene: pfam01881:cas6 Type: other Location: 269600-270337 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 270595-271704 bp CRISPR array Location: 345925-346481 bp Num of repeats: 9 Spacers: s4-s11 CRISPR array Location: 345925-346481 bp Num of repeats: 9 Spacers: s4-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 97856-98082 bp]: array | spacers
           [Locus range 345925-346481 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FULH01000023.1 Clostridioides difficile strain VRECD0129 genome assembly, contig: ERS717006SCcontig000023, whole genome shotgun sequence

⇒Summary: seq-len = 14879 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5171-5598 bp Zoom in on locus 1 x7 CRISPR array Location: 5171-5598 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 5171-5598 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5171-5598 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FULH01000002.1 Clostridioides difficile strain VRECD0129 genome assembly, contig: ERS717006SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 551231 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 355772-356194 bp 2 Locus 2: 472543-473302 bp Zoom in on locus 1 x7 Zoom in on locus 2 x12 CRISPR array Location: 355772-356194 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 355772-356194 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 472543-473302 bp Num of repeats: 12 Spacers: s7-s17 CRISPR array Location: 472543-473302 bp Num of repeats: 12 Spacers: s7-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 355772-356194 bp]: array | spacers
           [Locus range 472543-473302 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FULH01000005.1 Clostridioides difficile strain VRECD0129 genome assembly, contig: ERS717006SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 519410 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 20204-20298 bp Zoom in on locus 1 x2 CRISPR array Location: 20204-20298 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 20204-20298 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 20204-20298 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)