CRISPRone

CRISPRone report for GCA_900164155.1_16780_8_7

♦ Seq 1: FULI01000002.1 Clostridioides difficile strain VRECD0121 genome assembly, contig: ERS716994SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 537510 bp; # of CRISPR array = 1; # of cas gene = 9  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1072-5358 bp 2 Locus 2: 194251-194543 bp 3 Locus 3: 269722-277587 bp Zoom in on locus 1 Zoom in on locus 2 x5 Zoom in on locus 3 Gene: pfam00078:RT Type: other Location: 1072-2868 bp Gene: unk Type: unknown Location: 3118-4011 bp Gene: COG1332:csm5gr7 Type: Subtype-III-A Location: 4123-4734 bp Gene: mkCas0151:cas8b10 Type: Subtype-I-B Location: 4798-5358 bp CRISPR array Location: 194251-194543 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 194251-194543 bp Num of repeats: 5 Spacers: s1-s4 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 269722-270831 bp Gene: pfam01881:cas6 Type: other Location: 271089-271826 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 271831-273306 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 273326-274339 bp Gene: cd09693:cas5 Type: Type-I Location: 274355-275152 bp Gene: cd09641:cas3HD Type: Type-I Location: 275179-277587 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 194251-194543 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FULI01000003.1 Clostridioides difficile strain VRECD0121 genome assembly, contig: ERS716994SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 467657 bp; # of CRISPR array = 3; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 155880-166066 bp 2 Locus 2: 223740-227354 bp Zoom in on locus 1 x10 Zoom in on locus 2 x8 x13 Gene: pfam13280:WYL Type: other Location: 155880-156794 bp Gene: pfam01881:cas6 Type: other Location: 156815-157609 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 157615-159492 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 159494-160408 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 160410-161111 bp Gene: COG1203:cas3 Type: Type-I Location: 161122-163443 bp Gene: pfam01930:cas4 Type: Type-I Location: 163458-164009 bp Gene: cd09722:cas1 Type: universal Location: 164012-164992 bp Gene: cd09725:cas2 Type: universal Location: 164995-165261 bp CRISPR array Location: 165445-166066 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 165445-166066 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 223740-224228 bp Num of repeats: 8 Spacers: s10-s16 CRISPR array Location: 223740-224228 bp Num of repeats: 8 Spacers: s10-s16 CRISPR array Location: 226531-227354 bp Num of repeats: 13 Spacers: s17-s28 CRISPR array Location: 226531-227354 bp Num of repeats: 13 Spacers: s17-s28 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 165445-166066 bp]: array | spacers
           [Locus range 223740-224228 bp]: array | spacers
           [Locus range 226531-227354 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FULI01000029.1 Clostridioides difficile strain VRECD0121 genome assembly, contig: ERS716994SCcontig000029, whole genome shotgun sequence

⇒Summary: seq-len = 8827 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3589-4140 bp Zoom in on locus 1 x9 CRISPR array Location: 3589-4140 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 3589-4140 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3589-4140 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FULI01000001.1 Clostridioides difficile strain VRECD0121 genome assembly, contig: ERS716994SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 987799 bp; # of CRISPR array = 4; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 120949-121177 bp 2 Locus 2: 231502-232258 bp 3 Locus 3: 405933-407285 bp 4 Locus 4: 695522-695750 bp Zoom in on locus 1 x4 Zoom in on locus 2 x12 Zoom in on locus 3 x21 Zoom in on locus 4 x4 CRISPR array Location: 120949-121177 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 120949-121177 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 231502-232258 bp Num of repeats: 12 Spacers: s4-s14 CRISPR array Location: 231502-232258 bp Num of repeats: 12 Spacers: s4-s14 CRISPR array Location: 405933-407285 bp Num of repeats: 21 Spacers: s15-s34 CRISPR array Location: 405933-407285 bp Num of repeats: 21 Spacers: s15-s34 CRISPR array Location: 695522-695750 bp Num of repeats: 4 Spacers: s35-s37 CRISPR array Location: 695522-695750 bp Num of repeats: 4 Spacers: s35-s37 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 120949-121177 bp]: array | spacers
           [Locus range 231502-232258 bp]: array | spacers
           [Locus range 405933-407285 bp]: array | spacers
           [Locus range 695522-695750 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FULI01000013.1 Clostridioides difficile strain VRECD0121 genome assembly, contig: ERS716994SCcontig000013, whole genome shotgun sequence

⇒Summary: seq-len = 95577 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 19775-19869 bp Zoom in on locus 1 x2 CRISPR array Location: 19775-19869 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 19775-19869 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 19775-19869 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)