CRISPRone

CRISPRone report for GCA_900164165.1_16780_8_51

♦ Seq 1: FULV01000002.1 Clostridioides difficile strain VRECD0163 genome assembly, contig: ERS717038SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 477088 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 90946-91172 bp Zoom in on locus 1 x4 CRISPR array Location: 90946-91172 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 90946-91172 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 90946-91172 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FULV01000011.1 Clostridioides difficile strain VRECD0163 genome assembly, contig: ERS717038SCcontig000011, whole genome shotgun sequence

⇒Summary: seq-len = 127880 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17737-18228 bp 2 Locus 2: 109599-110961 bp Zoom in on locus 1 x8 Zoom in on locus 2 x3 x8 CRISPR array Location: 17737-18228 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 17737-18228 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 109599-109760 bp Num of repeats: 3 Spacers: s8-s9 CRISPR array Location: 109599-109760 bp Num of repeats: 3 Spacers: s8-s9 CRISPR array Location: 110469-110961 bp Num of repeats: 8 Spacers: s10-s16 CRISPR array Location: 110469-110961 bp Num of repeats: 8 Spacers: s10-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 17737-18228 bp]: array | spacers
           [Locus range 109599-109760 bp]: array | spacers
           [Locus range 110469-110961 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FULV01000001.1 Clostridioides difficile strain VRECD0163 genome assembly, contig: ERS717038SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1149301 bp; # of CRISPR array = 4; # of cas gene = 8  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 280240-280594 bp 2 Locus 2: 326166-328036 bp 3 Locus 3: 633379-634264 bp 4 Locus 4: 799300-807156 bp 5 Locus 5: 880567-880661 bp 6 Locus 6: 1037486-1044946 bp Zoom in on locus 1 x6 Zoom in on locus 2 x29 Zoom in on locus 3 x14 Zoom in on locus 4 Zoom in on locus 5 x2 Zoom in on locus 6 CRISPR array Location: 280240-280594 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 280240-280594 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 326166-328036 bp Num of repeats: 29 Spacers: s6-s33 CRISPR array Location: 326166-328036 bp Num of repeats: 29 Spacers: s6-s33 CRISPR array Location: 633379-634264 bp Num of repeats: 14 Spacers: s34-s46 CRISPR array Location: 633379-634264 bp Num of repeats: 14 Spacers: s34-s46 Gene: cd09641:cas3HD Type: Type-I Location: 799300-801708 bp Gene: cd09693:cas5 Type: Type-I Location: 801735-802532 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 802548-803561 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 803581-805047 bp Gene: pfam01881:cas6 Type: other Location: 805052-805789 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 806047-807156 bp CRISPR array Location: 880567-880661 bp Num of repeats: 2 Spacers: s47-s47 CRISPR array Location: 880567-880661 bp Num of repeats: 2 Spacers: s47-s47 Gene: mkCas0179:cas2 Type: universal Location: 1037486-1038751 bp Gene: pfam00078:RT Type: other Location: 1043135-1044946 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 280240-280594 bp]: array | spacers
           [Locus range 326166-328036 bp]: array | spacers
           [Locus range 633379-634264 bp]: array | spacers
           [Locus range 880567-880661 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FULV01000003.1 Clostridioides difficile strain VRECD0163 genome assembly, contig: ERS717038SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 403309 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 141148-151045 bp Zoom in on locus 1 x6 Gene: pfam13280:WYL Type: other Location: 141148-142035 bp Gene: pfam01881:cas6 Type: other Location: 142113-142850 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 142856-144733 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 144735-145649 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 145651-146352 bp Gene: COG1203:cas3 Type: Type-I Location: 146363-148684 bp Gene: pfam01930:cas4 Type: Type-I Location: 148699-149250 bp Gene: cd09722:cas1 Type: universal Location: 149253-150233 bp Gene: cd09725:cas2 Type: universal Location: 150236-150502 bp CRISPR array Location: 150686-151045 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 150686-151045 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 150686-151045 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FULV01000007.1 Clostridioides difficile strain VRECD0163 genome assembly, contig: ERS717038SCcontig000007, whole genome shotgun sequence

⇒Summary: seq-len = 181932 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 123309-124129 bp Zoom in on locus 1 x13 CRISPR array Location: 123309-124129 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 123309-124129 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 123309-124129 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FULV01000014.1 Clostridioides difficile strain VRECD0163 genome assembly, contig: ERS717038SCcontig000014, whole genome shotgun sequence

⇒Summary: seq-len = 102890 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 13766-13860 bp Zoom in on locus 1 x2 CRISPR array Location: 13766-13860 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 13766-13860 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 13766-13860 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: FULV01000010.1 Clostridioides difficile strain VRECD0163 genome assembly, contig: ERS717038SCcontig000010, whole genome shotgun sequence

⇒Summary: seq-len = 135168 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 102612-109893 bp Zoom in on locus 1 x17 CRISPR array Location: 102612-103690 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 102612-103690 bp Num of repeats: 17 Spacers: s1-s16 Gene: COG1203:cas3 Type: Type-I Location: 104257-106239 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 106250-107320 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 107341-108489 bp Gene: pfam01881:cas6 Type: other Location: 108491-109255 bp Gene: cd09693:cas5 Type: Type-I Location: 109246-109893 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 102612-103690 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)