CRISPRone

CRISPRone report for GCA_900164175.1_16780_8_21

♦ Seq 1: FULZ01000002.1 Clostridioides difficile strain VRECD0131 genome assembly, contig: ERS717008SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 577067 bp; # of CRISPR array = 3; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 252767-263970 bp 2 Locus 2: 486377-486470 bp 3 Locus 3: 512279-513428 bp Zoom in on locus 1 x26 Zoom in on locus 2 x2 Zoom in on locus 3 x18 CRISPR array Location: 252767-254432 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 252767-254432 bp Num of repeats: 26 Spacers: s1-s25 Gene: cd09725:cas2 Type: universal Location: 254616-254882 bp Gene: cd09722:cas1 Type: universal Location: 254885-255865 bp Gene: pfam01930:cas4 Type: Type-I Location: 255868-256386 bp Gene: COG1203:cas3 Type: Type-I Location: 256434-258755 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 258766-259467 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 259469-260383 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 260385-262235 bp Gene: pfam01881:cas6 Type: other Location: 262241-263035 bp Gene: pfam13280:WYL Type: other Location: 263056-263970 bp CRISPR array Location: 486377-486470 bp Num of repeats: 2 Spacers: s26-s26 CRISPR array Location: 486377-486470 bp Num of repeats: 2 Spacers: s26-s26 CRISPR array Location: 512279-513428 bp Num of repeats: 18 Spacers: s27-s43 CRISPR array Location: 512279-513428 bp Num of repeats: 18 Spacers: s27-s43 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 252767-254432 bp]: array | spacers
           [Locus range 486377-486470 bp]: array | spacers
           [Locus range 512279-513428 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FULZ01000006.1 Clostridioides difficile strain VRECD0131 genome assembly, contig: ERS717008SCcontig000006, whole genome shotgun sequence

⇒Summary: seq-len = 282715 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 139232-141747 bp Zoom in on locus 1 x6 x8 CRISPR array Location: 139232-139590 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 139232-139590 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 141257-141747 bp Num of repeats: 8 Spacers: s6-s12 CRISPR array Location: 141257-141747 bp Num of repeats: 8 Spacers: s6-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 139232-139590 bp]: array | spacers
           [Locus range 141257-141747 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FULZ01000003.1 Clostridioides difficile strain VRECD0131 genome assembly, contig: ERS717008SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 574261 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 244813-245238 bp 2 Locus 2: 318520-326841 bp 3 Locus 3: 490113-490730 bp Zoom in on locus 1 x7 Zoom in on locus 2 Zoom in on locus 3 x10 CRISPR array Location: 244813-245238 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 244813-245238 bp Num of repeats: 7 Spacers: s1-s6 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 318520-319629 bp Gene: unk Type: unknown Location: 320063-320239 bp Gene: pfam01881:cas6 Type: other Location: 320340-321077 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 321082-322557 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 322577-323593 bp Gene: cd09693:cas5 Type: Type-I Location: 323609-324406 bp Gene: cd09641:cas3HD Type: Type-I Location: 324433-326841 bp CRISPR array Location: 490113-490730 bp Num of repeats: 10 Spacers: s7-s15 CRISPR array Location: 490113-490730 bp Num of repeats: 10 Spacers: s7-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 244813-245238 bp]: array | spacers
           [Locus range 490113-490730 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FULZ01000005.1 Clostridioides difficile strain VRECD0131 genome assembly, contig: ERS717008SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 404575 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 97320-97480 bp Zoom in on locus 1 x3 CRISPR array Location: 97320-97480 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 97320-97480 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 97320-97480 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FULZ01000001.1 Clostridioides difficile strain VRECD0131 genome assembly, contig: ERS717008SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 676422 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 391665-392158 bp 2 Locus 2: 502480-503237 bp Zoom in on locus 1 x8 Zoom in on locus 2 x12 CRISPR array Location: 391665-392158 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 391665-392158 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 502480-503237 bp Num of repeats: 12 Spacers: s8-s18 CRISPR array Location: 502480-503237 bp Num of repeats: 12 Spacers: s8-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 391665-392158 bp]: array | spacers
           [Locus range 502480-503237 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)