CRISPRone

CRISPRone report for GCA_900164185.1_16780_8_48

♦ Seq 1: FUMA01000004.1 Clostridioides difficile strain VRECD0160 genome assembly, contig: ERS717035SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 529907 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 44840-44934 bp 2 Locus 2: 266346-277195 bp Zoom in on locus 1 x2 Zoom in on locus 2 x21 CRISPR array Location: 44840-44934 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 44840-44934 bp Num of repeats: 2 Spacers: s1-s1 Gene: pfam13280:WYL Type: other Location: 266346-267233 bp Gene: pfam01881:cas6 Type: other Location: 267311-268048 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 268054-269904 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 269906-270820 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 270822-271523 bp Gene: COG1203:cas3 Type: Type-I Location: 271534-273855 bp Gene: pfam01930:cas4 Type: Type-I Location: 273870-274421 bp Gene: cd09722:cas1 Type: universal Location: 274424-275404 bp Gene: cd09725:cas2 Type: universal Location: 275407-275673 bp CRISPR array Location: 275857-277195 bp Num of repeats: 21 Spacers: s2-s21 CRISPR array Location: 275857-277195 bp Num of repeats: 21 Spacers: s2-s21 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 44840-44934 bp]: array | spacers
           [Locus range 275857-277195 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUMA01000006.1 Clostridioides difficile strain VRECD0160 genome assembly, contig: ERS717035SCcontig000006, whole genome shotgun sequence

⇒Summary: seq-len = 404492 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 306987-307148 bp Zoom in on locus 1 x3 CRISPR array Location: 306987-307148 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 306987-307148 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 306987-307148 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUMA01000002.1 Clostridioides difficile strain VRECD0160 genome assembly, contig: ERS717035SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 551935 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 218999-219357 bp 2 Locus 2: 292639-300960 bp 3 Locus 3: 464232-464849 bp Zoom in on locus 1 x6 Zoom in on locus 2 Zoom in on locus 3 x10 CRISPR array Location: 218999-219357 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 218999-219357 bp Num of repeats: 6 Spacers: s1-s5 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 292639-293748 bp Gene: unk Type: unknown Location: 294182-294358 bp Gene: pfam01881:cas6 Type: other Location: 294459-295196 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 295201-296676 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 296696-297712 bp Gene: cd09693:cas5 Type: Type-I Location: 297728-298525 bp Gene: cd09641:cas3HD Type: Type-I Location: 298552-300960 bp CRISPR array Location: 464232-464849 bp Num of repeats: 10 Spacers: s6-s14 CRISPR array Location: 464232-464849 bp Num of repeats: 10 Spacers: s6-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 218999-219357 bp]: array | spacers
           [Locus range 464232-464849 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUMA01000003.1 Clostridioides difficile strain VRECD0160 genome assembly, contig: ERS717035SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 535887 bp; # of CRISPR array = 6; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 64166-65249 bp 2 Locus 2: 254587-255146 bp 3 Locus 3: 365437-365996 bp 4 Locus 4: 456724-461655 bp Zoom in on locus 1 x17 Zoom in on locus 2 x9 Zoom in on locus 3 x9 Zoom in on locus 4 x7 x4 x14 CRISPR array Location: 64166-65249 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 64166-65249 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 254587-255146 bp Num of repeats: 9 Spacers: s17-s24 CRISPR array Location: 254587-255146 bp Num of repeats: 9 Spacers: s17-s24 CRISPR array Location: 365437-365996 bp Num of repeats: 9 Spacers: s25-s32 CRISPR array Location: 365437-365996 bp Num of repeats: 9 Spacers: s25-s32 CRISPR array Location: 456724-457148 bp Num of repeats: 7 Spacers: s33-s38 CRISPR array Location: 456724-457148 bp Num of repeats: 7 Spacers: s33-s38 CRISPR array Location: 458752-458976 bp Num of repeats: 4 Spacers: s39-s41 CRISPR array Location: 458752-458976 bp Num of repeats: 4 Spacers: s39-s41 CRISPR array Location: 460769-461655 bp Num of repeats: 14 Spacers: s42-s54 CRISPR array Location: 460769-461655 bp Num of repeats: 14 Spacers: s42-s54 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 64166-65249 bp]: array | spacers
           [Locus range 254587-255146 bp]: array | spacers
           [Locus range 365437-365996 bp]: array | spacers
           [Locus range 456724-457148 bp]: array | spacers
           [Locus range 458752-458976 bp]: array | spacers
           [Locus range 460769-461655 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)