CRISPRone

CRISPRone report for GCA_900164195.1_16780_8_63

♦ Seq 1: FULW01000002.1 Clostridioides difficile strain VRECD0177 genome assembly, contig: ERS717050SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 494143 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 91575-91930 bp 2 Locus 2: 297535-298154 bp Zoom in on locus 1 x6 Zoom in on locus 2 x10 CRISPR array Location: 91575-91930 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 91575-91930 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 297535-298154 bp Num of repeats: 10 Spacers: s6-s14 CRISPR array Location: 297535-298154 bp Num of repeats: 10 Spacers: s6-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 91575-91930 bp]: array | spacers
           [Locus range 297535-298154 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FULW01000003.1 Clostridioides difficile strain VRECD0177 genome assembly, contig: ERS717050SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 454161 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 255652-266860 bp Zoom in on locus 1 x26 CRISPR array Location: 255652-257322 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 255652-257322 bp Num of repeats: 26 Spacers: s1-s25 Gene: cd09725:cas2 Type: universal Location: 257506-257772 bp Gene: cd09722:cas1 Type: universal Location: 257775-258755 bp Gene: pfam01930:cas4 Type: Type-I Location: 258758-259276 bp Gene: COG1203:cas3 Type: Type-I Location: 259324-261645 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 261656-262357 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 262359-263273 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 263275-265125 bp Gene: pfam01881:cas6 Type: other Location: 265131-265925 bp Gene: pfam13280:WYL Type: other Location: 265946-266860 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 255652-257322 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FULW01000012.1 Clostridioides difficile strain VRECD0177 genome assembly, contig: ERS717050SCcontig000012, whole genome shotgun sequence

⇒Summary: seq-len = 100801 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 70933-78215 bp Zoom in on locus 1 x17 CRISPR array Location: 70933-72012 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 70933-72012 bp Num of repeats: 17 Spacers: s1-s16 Gene: COG1203:cas3 Type: Type-I Location: 72579-74561 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 74572-75642 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 75663-76811 bp Gene: pfam01881:cas6 Type: other Location: 76813-77577 bp Gene: cd09693:cas5 Type: Type-I Location: 77568-78215 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 70933-72012 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FULW01000001.1 Clostridioides difficile strain VRECD0177 genome assembly, contig: ERS717050SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1213617 bp; # of CRISPR array = 8; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45944-46303 bp 2 Locus 2: 119572-127437 bp 3 Locus 3: 292875-293957 bp 4 Locus 4: 590293-591703 bp 5 Locus 5: 637373-637599 bp 6 Locus 6: 954090-955828 bp 7 Locus 7: 1102969-1104617 bp 8 Locus 8: 1194882-1195439 bp Zoom in on locus 1 x6 Zoom in on locus 2 Zoom in on locus 3 x17 Zoom in on locus 4 x22 Zoom in on locus 5 x4 Zoom in on locus 6 x27 Zoom in on locus 7 x14 x3 Zoom in on locus 8 x9 CRISPR array Location: 45944-46303 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 45944-46303 bp Num of repeats: 6 Spacers: s1-s5 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 119572-120681 bp Gene: pfam01881:cas6 Type: other Location: 120939-121676 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 121681-123156 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 123176-124189 bp Gene: cd09693:cas5 Type: Type-I Location: 124205-125002 bp Gene: cd09641:cas3HD Type: Type-I Location: 125029-127437 bp CRISPR array Location: 292875-293957 bp Num of repeats: 17 Spacers: s6-s21 CRISPR array Location: 292875-293957 bp Num of repeats: 17 Spacers: s6-s21 CRISPR array Location: 590293-591703 bp Num of repeats: 22 Spacers: s22-s42 CRISPR array Location: 590293-591703 bp Num of repeats: 22 Spacers: s22-s42 CRISPR array Location: 637373-637599 bp Num of repeats: 4 Spacers: s43-s45 CRISPR array Location: 637373-637599 bp Num of repeats: 4 Spacers: s43-s45 CRISPR array Location: 954090-955828 bp Num of repeats: 27 Spacers: s46-s71 CRISPR array Location: 954090-955828 bp Num of repeats: 27 Spacers: s46-s71 CRISPR array Location: 1102969-1103854 bp Num of repeats: 14 Spacers: s72-s84 CRISPR array Location: 1102969-1103854 bp Num of repeats: 14 Spacers: s72-s84 CRISPR array Location: 1104457-1104617 bp Num of repeats: 3 Spacers: s85-s86 CRISPR array Location: 1104457-1104617 bp Num of repeats: 3 Spacers: s85-s86 CRISPR array Location: 1194882-1195439 bp Num of repeats: 9 Spacers: s87-s94 CRISPR array Location: 1194882-1195439 bp Num of repeats: 9 Spacers: s87-s94 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 45944-46303 bp]: array | spacers
           [Locus range 292875-293957 bp]: array | spacers
           [Locus range 590293-591703 bp]: array | spacers
           [Locus range 637373-637599 bp]: array | spacers
           [Locus range 954090-955828 bp]: array | spacers
           [Locus range 1102969-1103854 bp]: array | spacers
           [Locus range 1104457-1104617 bp]: array | spacers
           [Locus range 1194882-1195439 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)