CRISPRone

CRISPRone report for GCA_900164205.1_16780_8_8

♦ Seq 1: FULT01000002.1 Clostridioides difficile strain VRECD0123 genome assembly, contig: ERS716995SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 483640 bp; # of CRISPR array = 3; # of cas gene = 10  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 67905-79492 bp 2 Locus 2: 187481-188295 bp 3 Locus 3: 243707-256018 bp Zoom in on locus 1 x39 Zoom in on locus 2 x13 Zoom in on locus 3 x44 Gene: cd09652:cas6 Type: other Location: 67905-68600 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 68612-70351 bp Gene: pfam05107:cas7b Type: Type-I Location: 70344-71333 bp Gene: cd09693:cas5 Type: Type-I Location: 71335-72075 bp Gene: cd09641:cas3HD Type: Type-I Location: 72099-74657 bp CRISPR array Location: 74847-77380 bp Num of repeats: 39 Spacers: s1-s38 CRISPR array Location: 74847-77380 bp Num of repeats: 39 Spacers: s1-s38 Gene: pfam01930:cas4 Type: Type-I Location: 77464-77958 bp Gene: cd09722:cas1 Type: universal Location: 77984-78991 bp Gene: cd09725:cas2 Type: universal Location: 79202-79492 bp CRISPR array Location: 187481-188295 bp Num of repeats: 13 Spacers: s39-s50 CRISPR array Location: 187481-188295 bp Num of repeats: 13 Spacers: s39-s50 Gene: COG0640:csa3 Type: Subtype-I-A Location: 243707-244084 bp Gene: cd09718:cas1 Type: universal Location: 244096-245751 bp CRISPR array Location: 253153-256018 bp Num of repeats: 44 Spacers: s51-s93 CRISPR array Location: 253153-256018 bp Num of repeats: 44 Spacers: s51-s93 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 74847-77380 bp]: array | spacers
           [Locus range 187481-188295 bp]: array | spacers
           [Locus range 253153-256018 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FULT01000003.1 Clostridioides difficile strain VRECD0123 genome assembly, contig: ERS716995SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 348361 bp; # of CRISPR array = 0; # of cas gene = 9  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 89168-97495 bp 2 Locus 2: 150098-161051 bp Zoom in on locus 1 Zoom in on locus 2 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 89168-90277 bp Gene: unk Type: unknown Location: 90730-90906 bp Gene: pfam01881:cas6 Type: other Location: 91007-91744 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 91749-93215 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 93234-94247 bp Gene: cd09693:cas5 Type: Type-I Location: 94263-95060 bp Gene: cd09641:cas3HD Type: Type-I Location: 95087-97495 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 150098-150583 bp Gene: cd06127:DEDDh Type: Type-I Location: 157398-158435 bp Gene: unk Type: unknown Location: 158799-159305 bp Gene: unk Type: unknown Location: 159718-160386 bp Gene: cd06127:DEDDh Type: Type-I Location: 160545-161051 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FULT01000023.1 Clostridioides difficile strain VRECD0123 genome assembly, contig: ERS716995SCcontig000023, whole genome shotgun sequence

⇒Summary: seq-len = 10411 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5079-5705 bp Zoom in on locus 1 x10 CRISPR array Location: 5079-5705 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 5079-5705 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5079-5705 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FULT01000013.1 Clostridioides difficile strain VRECD0123 genome assembly, contig: ERS716995SCcontig000013, whole genome shotgun sequence

⇒Summary: seq-len = 147338 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 9850-21549 bp Zoom in on locus 1 x33 Gene: pfam13280:WYL Type: other Location: 9850-10803 bp Gene: pfam01881:cas6 Type: other Location: 10881-11618 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 11624-13474 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 13476-14390 bp Gene: cd09693:cas5 Type: Type-I Location: 14392-15093 bp Gene: COG1203:cas3 Type: Type-I Location: 15104-17425 bp Gene: pfam01930:cas4 Type: Type-I Location: 17440-17991 bp Gene: cd09722:cas1 Type: universal Location: 17994-18974 bp Gene: cd09725:cas2 Type: universal Location: 18977-19243 bp CRISPR array Location: 19427-21549 bp Num of repeats: 33 Spacers: s1-s32 CRISPR array Location: 19427-21549 bp Num of repeats: 33 Spacers: s1-s32 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 19427-21549 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FULT01000001.1 Clostridioides difficile strain VRECD0123 genome assembly, contig: ERS716995SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 738678 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 55586-56735 bp Zoom in on locus 1 x18 CRISPR array Location: 55586-56735 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 55586-56735 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 55586-56735 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)