CRISPRone

CRISPRone report for GCA_900164225.1_16780_8_15

♦ Seq 1: FUMC01000005.1 Clostridioides difficile strain VRECD0125 genome assembly, contig: ERS717002SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 311649 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 63421-63842 bp 2 Locus 2: 174135-174362 bp Zoom in on locus 1 x7 Zoom in on locus 2 x4 CRISPR array Location: 63421-63842 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 63421-63842 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 174135-174362 bp Num of repeats: 4 Spacers: s7-s9 CRISPR array Location: 174135-174362 bp Num of repeats: 4 Spacers: s7-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 63421-63842 bp]: array | spacers
           [Locus range 174135-174362 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUMC01000001.1 Clostridioides difficile strain VRECD0125 genome assembly, contig: ERS717002SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1229080 bp; # of CRISPR array = 5; # of cas gene = 14  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 244782-245274 bp 2 Locus 2: 318521-326386 bp 3 Locus 3: 488354-489105 bp 4 Locus 4: 678733-690723 bp 5 Locus 5: 880971-881133 bp 6 Locus 6: 1190362-1190722 bp Zoom in on locus 1 x8 Zoom in on locus 2 Zoom in on locus 3 x12 Zoom in on locus 4 x45 Zoom in on locus 5 x3 Zoom in on locus 6 x6 CRISPR array Location: 244782-245274 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 244782-245274 bp Num of repeats: 8 Spacers: s1-s7 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 318521-319630 bp Gene: pfam01881:cas6 Type: other Location: 319888-320625 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 320630-322105 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 322125-323138 bp Gene: cd09693:cas5 Type: Type-I Location: 323154-323951 bp Gene: cd09641:cas3HD Type: Type-I Location: 323978-326386 bp CRISPR array Location: 488354-489105 bp Num of repeats: 12 Spacers: s8-s18 CRISPR array Location: 488354-489105 bp Num of repeats: 12 Spacers: s8-s18 Gene: cd09652:cas6 Type: other Location: 678733-679428 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 679440-681179 bp Gene: pfam05107:cas7b Type: Type-I Location: 681172-682161 bp Gene: cd09693:cas5 Type: Type-I Location: 682163-682903 bp Gene: cd09641:cas3HD Type: Type-I Location: 682927-685485 bp CRISPR array Location: 685675-688611 bp Num of repeats: 45 Spacers: s19-s62 CRISPR array Location: 685675-688611 bp Num of repeats: 45 Spacers: s19-s62 Gene: pfam01930:cas4 Type: Type-I Location: 688695-689189 bp Gene: cd09722:cas1 Type: universal Location: 689215-690222 bp Gene: cd09725:cas2 Type: universal Location: 690433-690723 bp CRISPR array Location: 880971-881133 bp Num of repeats: 3 Spacers: s63-s64 CRISPR array Location: 880971-881133 bp Num of repeats: 3 Spacers: s63-s64 CRISPR array Location: 1190362-1190722 bp Num of repeats: 6 Spacers: s65-s69 CRISPR array Location: 1190362-1190722 bp Num of repeats: 6 Spacers: s65-s69 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 244782-245274 bp]: array | spacers
           [Locus range 488354-489105 bp]: array | spacers
           [Locus range 685675-688611 bp]: array | spacers
           [Locus range 880971-881133 bp]: array | spacers
           [Locus range 1190362-1190722 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUMC01000004.1 Clostridioides difficile strain VRECD0125 genome assembly, contig: ERS717002SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 370019 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 954-1115 bp Zoom in on locus 1 x3 CRISPR array Location: 954-1115 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 954-1115 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 954-1115 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)