CRISPRone

CRISPRone report for GCA_900164245.1_16780_8_50

♦ Seq 1: FULS01000001.1 Clostridioides difficile strain VRECD0162 genome assembly, contig: ERS717037SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 626675 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 282715-282941 bp 2 Locus 2: 356222-364090 bp 3 Locus 3: 529043-529337 bp Zoom in on locus 1 x4 Zoom in on locus 2 Zoom in on locus 3 x5 CRISPR array Location: 282715-282941 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 282715-282941 bp Num of repeats: 4 Spacers: s1-s3 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 356222-357331 bp Gene: pfam01881:cas6 Type: other Location: 357589-358326 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 358331-359806 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 359826-360842 bp Gene: cd09693:cas5 Type: Type-I Location: 360858-361655 bp Gene: cd09641:cas3HD Type: Type-I Location: 361682-364090 bp CRISPR array Location: 529043-529337 bp Num of repeats: 5 Spacers: s4-s7 CRISPR array Location: 529043-529337 bp Num of repeats: 5 Spacers: s4-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 282715-282941 bp]: array | spacers
           [Locus range 529043-529337 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FULS01000023.1 Clostridioides difficile strain VRECD0162 genome assembly, contig: ERS717037SCcontig000023, whole genome shotgun sequence

⇒Summary: seq-len = 14806 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4999-6017 bp Zoom in on locus 1 x16 CRISPR array Location: 4999-6017 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 4999-6017 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4999-6017 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FULS01000015.1 Clostridioides difficile strain VRECD0162 genome assembly, contig: ERS717037SCcontig000015, whole genome shotgun sequence

⇒Summary: seq-len = 65760 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 9368-10252 bp Zoom in on locus 1 x14 CRISPR array Location: 9368-10252 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 9368-10252 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 9368-10252 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FULS01000006.1 Clostridioides difficile strain VRECD0162 genome assembly, contig: ERS717037SCcontig000006, whole genome shotgun sequence

⇒Summary: seq-len = 281725 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 228899-229189 bp Zoom in on locus 1 x5 CRISPR array Location: 228899-229189 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 228899-229189 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 228899-229189 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FULS01000002.1 Clostridioides difficile strain VRECD0162 genome assembly, contig: ERS717037SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 466151 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 84006-84299 bp Zoom in on locus 1 x5 CRISPR array Location: 84006-84299 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 84006-84299 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 84006-84299 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FULS01000007.1 Clostridioides difficile strain VRECD0162 genome assembly, contig: ERS717037SCcontig000007, whole genome shotgun sequence

⇒Summary: seq-len = 245387 bp; # of CRISPR array = 4; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18208-18503 bp 2 Locus 2: 109955-113610 bp Zoom in on locus 1 x5 Zoom in on locus 2 x3 x17 x3 CRISPR array Location: 18208-18503 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 18208-18503 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 109955-110116 bp Num of repeats: 3 Spacers: s5-s6 CRISPR array Location: 109955-110116 bp Num of repeats: 3 Spacers: s5-s6 CRISPR array Location: 110718-111805 bp Num of repeats: 17 Spacers: s7-s22 CRISPR array Location: 110718-111805 bp Num of repeats: 17 Spacers: s7-s22 CRISPR array Location: 113449-113610 bp Num of repeats: 3 Spacers: s23-s24 CRISPR array Location: 113449-113610 bp Num of repeats: 3 Spacers: s23-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18208-18503 bp]: array | spacers
           [Locus range 109955-110116 bp]: array | spacers
           [Locus range 110718-111805 bp]: array | spacers
           [Locus range 113449-113610 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)