CRISPRone

CRISPRone report for GCA_900164255.1_16780_8_16

♦ Seq 1: FUMF01000002.1 Clostridioides difficile strain VRECD0126 genome assembly, contig: ERS717003SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 526241 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 266129-278196 bp Zoom in on locus 1 x39 Gene: pfam13280:WYL Type: other Location: 266129-267016 bp Gene: pfam01881:cas6 Type: other Location: 267094-267831 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 267837-269714 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 269716-270630 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 270632-271333 bp Gene: COG1203:cas3 Type: Type-I Location: 271344-273665 bp Gene: pfam01930:cas4 Type: Type-I Location: 273680-274231 bp Gene: cd09722:cas1 Type: universal Location: 274234-275214 bp Gene: cd09725:cas2 Type: universal Location: 275217-275483 bp CRISPR array Location: 275667-278196 bp Num of repeats: 39 Spacers: s1-s38 CRISPR array Location: 275667-278196 bp Num of repeats: 39 Spacers: s1-s38 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 275667-278196 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUMF01000013.1 Clostridioides difficile strain VRECD0126 genome assembly, contig: ERS717003SCcontig000013, whole genome shotgun sequence

⇒Summary: seq-len = 120265 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8037-8264 bp 2 Locus 2: 100890-101184 bp Zoom in on locus 1 x4 Zoom in on locus 2 x5 CRISPR array Location: 8037-8264 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 8037-8264 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 100890-101184 bp Num of repeats: 5 Spacers: s4-s7 CRISPR array Location: 100890-101184 bp Num of repeats: 5 Spacers: s4-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 8037-8264 bp]: array | spacers
           [Locus range 100890-101184 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUMF01000008.1 Clostridioides difficile strain VRECD0126 genome assembly, contig: ERS717003SCcontig000008, whole genome shotgun sequence

⇒Summary: seq-len = 217170 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 91725-91951 bp Zoom in on locus 1 x4 CRISPR array Location: 91725-91951 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 91725-91951 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 91725-91951 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUMF01000010.1 Clostridioides difficile strain VRECD0126 genome assembly, contig: ERS717003SCcontig000010, whole genome shotgun sequence

⇒Summary: seq-len = 189911 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 129261-130348 bp Zoom in on locus 1 x17 CRISPR array Location: 129261-130348 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 129261-130348 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 129261-130348 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FUMF01000004.1 Clostridioides difficile strain VRECD0126 genome assembly, contig: ERS717003SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 316262 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 257935-258092 bp Zoom in on locus 1 x3 CRISPR array Location: 257935-258092 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 257935-258092 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 257935-258092 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FUMF01000006.1 Clostridioides difficile strain VRECD0126 genome assembly, contig: ERS717003SCcontig000006, whole genome shotgun sequence

⇒Summary: seq-len = 243759 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 187956-189239 bp Zoom in on locus 1 x20 CRISPR array Location: 187956-189239 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 187956-189239 bp Num of repeats: 20 Spacers: s1-s19 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 187956-189239 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: FUMF01000001.1 Clostridioides difficile strain VRECD0126 genome assembly, contig: ERS717003SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 792753 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 244905-245401 bp 2 Locus 2: 318683-326539 bp 3 Locus 3: 491452-491874 bp Zoom in on locus 1 x8 Zoom in on locus 2 Zoom in on locus 3 x7 CRISPR array Location: 244905-245401 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 244905-245401 bp Num of repeats: 8 Spacers: s1-s7 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 318683-319792 bp Gene: pfam01881:cas6 Type: other Location: 320050-320787 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 320792-322258 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 322278-323291 bp Gene: cd09693:cas5 Type: Type-I Location: 323307-324104 bp Gene: cd09641:cas3HD Type: Type-I Location: 324131-326539 bp CRISPR array Location: 491452-491874 bp Num of repeats: 7 Spacers: s8-s13 CRISPR array Location: 491452-491874 bp Num of repeats: 7 Spacers: s8-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 244905-245401 bp]: array | spacers
           [Locus range 491452-491874 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)