CRISPRone

CRISPRone report for GCA_900164265.1_16780_8_52

♦ Seq 1: FUMM01000002.1 Clostridioides difficile strain VRECD0164 genome assembly, contig: ERS717039SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 785070 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 296069-296295 bp 2 Locus 2: 462052-469917 bp 3 Locus 3: 544138-544694 bp Zoom in on locus 1 x4 Zoom in on locus 2 Zoom in on locus 3 x9 CRISPR array Location: 296069-296295 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 296069-296295 bp Num of repeats: 4 Spacers: s1-s3 Gene: cd09641:cas3HD Type: Type-I Location: 462052-464460 bp Gene: cd09693:cas5 Type: Type-I Location: 464487-465284 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 465300-466313 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 466333-467808 bp Gene: pfam01881:cas6 Type: other Location: 467813-468550 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 468808-469917 bp CRISPR array Location: 544138-544694 bp Num of repeats: 9 Spacers: s4-s11 CRISPR array Location: 544138-544694 bp Num of repeats: 9 Spacers: s4-s11 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 296069-296295 bp]: array | spacers
           [Locus range 544138-544694 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUMM01000004.1 Clostridioides difficile strain VRECD0164 genome assembly, contig: ERS717039SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 519498 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 499198-499291 bp Zoom in on locus 1 x2 CRISPR array Location: 499198-499291 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 499198-499291 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 499198-499291 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUMM01000001.1 Clostridioides difficile strain VRECD0164 genome assembly, contig: ERS717039SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1082860 bp; # of CRISPR array = 7; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 144528-144955 bp 2 Locus 2: 348267-348689 bp 3 Locus 3: 465037-465796 bp 4 Locus 4: 555319-557294 bp 5 Locus 5: 707417-709157 bp 6 Locus 6: 1037481-1037706 bp Zoom in on locus 1 x7 Zoom in on locus 2 x7 Zoom in on locus 3 x12 Zoom in on locus 4 x9 x13 Zoom in on locus 5 x27 Zoom in on locus 6 x4 CRISPR array Location: 144528-144955 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 144528-144955 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 348267-348689 bp Num of repeats: 7 Spacers: s7-s12 CRISPR array Location: 348267-348689 bp Num of repeats: 7 Spacers: s7-s12 CRISPR array Location: 465037-465796 bp Num of repeats: 12 Spacers: s13-s23 CRISPR array Location: 465037-465796 bp Num of repeats: 12 Spacers: s13-s23 CRISPR array Location: 555319-555874 bp Num of repeats: 9 Spacers: s24-s31 CRISPR array Location: 555319-555874 bp Num of repeats: 9 Spacers: s24-s31 CRISPR array Location: 556476-557294 bp Num of repeats: 13 Spacers: s32-s43 CRISPR array Location: 556476-557294 bp Num of repeats: 13 Spacers: s32-s43 CRISPR array Location: 707417-709157 bp Num of repeats: 27 Spacers: s44-s69 CRISPR array Location: 707417-709157 bp Num of repeats: 27 Spacers: s44-s69 CRISPR array Location: 1037481-1037706 bp Num of repeats: 4 Spacers: s70-s72 CRISPR array Location: 1037481-1037706 bp Num of repeats: 4 Spacers: s70-s72 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 144528-144955 bp]: array | spacers
           [Locus range 348267-348689 bp]: array | spacers
           [Locus range 465037-465796 bp]: array | spacers
           [Locus range 555319-555874 bp]: array | spacers
           [Locus range 556476-557294 bp]: array | spacers
           [Locus range 707417-709157 bp]: array | spacers
           [Locus range 1037481-1037706 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)