CRISPRone

CRISPRone report for GCA_900164275.1_16780_8_5

♦ Seq 1: FUMB01000016.1 Clostridioides difficile strain VRECD0119 genome assembly, contig: ERS716992SCcontig000016, whole genome shotgun sequence

⇒Summary: seq-len = 27853 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7140-9324 bp Zoom in on locus 1 x3 x4 CRISPR array Location: 7140-7299 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 7140-7299 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 9100-9324 bp Num of repeats: 4 Spacers: s3-s5 CRISPR array Location: 9100-9324 bp Num of repeats: 4 Spacers: s3-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 7140-7299 bp]: array | spacers
           [Locus range 9100-9324 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUMB01000001.1 Clostridioides difficile strain VRECD0119 genome assembly, contig: ERS716992SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 968399 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 385401-385825 bp Zoom in on locus 1 x7 CRISPR array Location: 385401-385825 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 385401-385825 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 385401-385825 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUMB01000002.1 Clostridioides difficile strain VRECD0119 genome assembly, contig: ERS716992SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 816993 bp; # of CRISPR array = 3; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 22917-24655 bp 2 Locus 2: 328239-328664 bp 3 Locus 3: 491084-498949 bp 4 Locus 4: 572230-572324 bp Zoom in on locus 1 x27 Zoom in on locus 2 x7 Zoom in on locus 3 Zoom in on locus 4 x2 CRISPR array Location: 22917-24655 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 22917-24655 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 328239-328664 bp Num of repeats: 7 Spacers: s27-s32 CRISPR array Location: 328239-328664 bp Num of repeats: 7 Spacers: s27-s32 Gene: cd09641:cas3HD Type: Type-I Location: 491084-493492 bp Gene: cd09693:cas5 Type: Type-I Location: 493519-494316 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 494332-495345 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 495365-496840 bp Gene: pfam01881:cas6 Type: other Location: 496845-497582 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 497840-498949 bp CRISPR array Location: 572230-572324 bp Num of repeats: 2 Spacers: s33-s33 CRISPR array Location: 572230-572324 bp Num of repeats: 2 Spacers: s33-s33 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 22917-24655 bp]: array | spacers
           [Locus range 328239-328664 bp]: array | spacers
           [Locus range 572230-572324 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUMB01000020.1 Clostridioides difficile strain VRECD0119 genome assembly, contig: ERS716992SCcontig000020, whole genome shotgun sequence

⇒Summary: seq-len = 13982 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5018-5181 bp Zoom in on locus 1 x3 CRISPR array Location: 5018-5181 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 5018-5181 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5018-5181 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FUMB01000003.1 Clostridioides difficile strain VRECD0119 genome assembly, contig: ERS716992SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 789394 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 268720-269408 bp 2 Locus 2: 444063-445409 bp 3 Locus 3: 756278-756506 bp Zoom in on locus 1 x11 Zoom in on locus 2 x21 Zoom in on locus 3 x4 CRISPR array Location: 268720-269408 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 268720-269408 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 444063-445409 bp Num of repeats: 21 Spacers: s11-s30 CRISPR array Location: 444063-445409 bp Num of repeats: 21 Spacers: s11-s30 CRISPR array Location: 756278-756506 bp Num of repeats: 4 Spacers: s31-s33 CRISPR array Location: 756278-756506 bp Num of repeats: 4 Spacers: s31-s33 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 268720-269408 bp]: array | spacers
           [Locus range 444063-445409 bp]: array | spacers
           [Locus range 756278-756506 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FUMB01000004.1 Clostridioides difficile strain VRECD0119 genome assembly, contig: ERS716992SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 427202 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 252437-262682 bp Zoom in on locus 1 x11 CRISPR array Location: 252437-253117 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 252437-253117 bp Num of repeats: 11 Spacers: s1-s10 Gene: cd09725:cas2 Type: universal Location: 253301-253567 bp Gene: cd09722:cas1 Type: universal Location: 253570-254550 bp Gene: pfam01930:cas4 Type: Type-I Location: 254553-255071 bp Gene: COG1203:cas3 Type: Type-I Location: 255119-257440 bp Gene: cd09693:cas5 Type: Type-I Location: 257451-258152 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 258154-259068 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 259070-260947 bp Gene: pfam01881:cas6 Type: other Location: 260953-261690 bp Gene: pfam13280:WYL Type: other Location: 261768-262682 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 252437-253117 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)