CRISPRone

CRISPRone report for GCA_900164285.1_16780_8_17

♦ Seq 1: FULP01000016.1 Clostridioides difficile strain VRECD0127 genome assembly, contig: ERS717004SCcontig000016, whole genome shotgun sequence

⇒Summary: seq-len = 29243 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 22658-22753 bp Zoom in on locus 1 x2 CRISPR array Location: 22658-22753 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 22658-22753 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 22658-22753 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FULP01000015.1 Clostridioides difficile strain VRECD0127 genome assembly, contig: ERS717004SCcontig000015, whole genome shotgun sequence

⇒Summary: seq-len = 42444 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 32475-35376 bp Zoom in on locus 1 x13 x4 x2 CRISPR array Location: 32475-33296 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 32475-33296 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 34911-35137 bp Num of repeats: 4 Spacers: s13-s15 CRISPR array Location: 34911-35137 bp Num of repeats: 4 Spacers: s13-s15 CRISPR array Location: 35281-35376 bp Num of repeats: 2 Spacers: s16-s16 CRISPR array Location: 35281-35376 bp Num of repeats: 2 Spacers: s16-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 32475-33296 bp]: array | spacers
           [Locus range 34911-35137 bp]: array | spacers
           [Locus range 35281-35376 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FULP01000004.1 Clostridioides difficile strain VRECD0127 genome assembly, contig: ERS717004SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 476815 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 191218-201179 bp Zoom in on locus 1 x7 Gene: pfam13280:WYL Type: other Location: 191218-192105 bp Gene: pfam01881:cas6 Type: other Location: 192183-192920 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 192926-194803 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 194805-195719 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 195721-196422 bp Gene: cd09641:cas3HD Type: Type-I Location: 196433-198754 bp Gene: pfam01930:cas4 Type: Type-I Location: 198769-199320 bp Gene: cd09722:cas1 Type: universal Location: 199323-200303 bp Gene: cd09725:cas2 Type: universal Location: 200306-200572 bp CRISPR array Location: 200756-201179 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 200756-201179 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 200756-201179 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FULP01000001.1 Clostridioides difficile strain VRECD0127 genome assembly, contig: ERS717004SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1145991 bp; # of CRISPR array = 3; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 239601-240164 bp 2 Locus 2: 313446-321792 bp 3 Locus 3: 485211-485961 bp 4 Locus 4: 858763-859054 bp Zoom in on locus 1 x9 Zoom in on locus 2 Zoom in on locus 3 x12 Zoom in on locus 4 x5 CRISPR array Location: 239601-240164 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 239601-240164 bp Num of repeats: 9 Spacers: s1-s8 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 313446-314555 bp Gene: unk Type: unknown Location: 315014-315190 bp Gene: pfam01881:cas6 Type: other Location: 315291-316028 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 316033-317508 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 317528-318544 bp Gene: cd09693:cas5 Type: Type-I Location: 318560-319357 bp Gene: cd09641:cas3HD Type: Type-I Location: 319384-321792 bp CRISPR array Location: 485211-485961 bp Num of repeats: 12 Spacers: s9-s19 CRISPR array Location: 485211-485961 bp Num of repeats: 12 Spacers: s9-s19 CRISPR array Location: 858763-859054 bp Num of repeats: 5 Spacers: s20-s23 CRISPR array Location: 858763-859054 bp Num of repeats: 5 Spacers: s20-s23 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 239601-240164 bp]: array | spacers
           [Locus range 485211-485961 bp]: array | spacers
           [Locus range 858763-859054 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FULP01000002.1 Clostridioides difficile strain VRECD0127 genome assembly, contig: ERS717004SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 772979 bp; # of CRISPR array = 4; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 190006-190561 bp 2 Locus 2: 421067-421758 bp 3 Locus 3: 532078-533758 bp 4 Locus 4: 707979-709251 bp Zoom in on locus 1 x9 Zoom in on locus 2 x11 Zoom in on locus 3 x26 Zoom in on locus 4 x20 CRISPR array Location: 190006-190561 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 190006-190561 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 421067-421758 bp Num of repeats: 11 Spacers: s9-s18 CRISPR array Location: 421067-421758 bp Num of repeats: 11 Spacers: s9-s18 CRISPR array Location: 532078-533758 bp Num of repeats: 26 Spacers: s19-s43 CRISPR array Location: 532078-533758 bp Num of repeats: 26 Spacers: s19-s43 CRISPR array Location: 707979-709251 bp Num of repeats: 20 Spacers: s44-s62 CRISPR array Location: 707979-709251 bp Num of repeats: 20 Spacers: s44-s62 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 190006-190561 bp]: array | spacers
           [Locus range 421067-421758 bp]: array | spacers
           [Locus range 532078-533758 bp]: array | spacers
           [Locus range 707979-709251 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)